Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00922 ATGAGCAACATAAGCATGGTAGAGGCAAAGTTGCCACCAGGGTTCAGGTTCCATCCAAGAGATGAAGAGCTTGTGTGTGATTACTTGATGAAGAAGGTCACACACAATGATTCCCTTCTCATGATAGATGTTGACCTTAACAAGTGTGAACCTTGGGATATTCCTGAAACAGCATGTGTGGGAGGGAAAGAGTGGTATTTCTACACACAAAGAGACCGTAAGTATGCAACAGGGTTACGCACAAATCGTGCCACTGCCTCAGGGTACTGGAAGGCCACAGGGAAGGACAGGCCTATCCTTCGCAAGGGCACCCTTGTTGGGATGAGGAAGACTTTGGTGTTCTATCAAGGAAGGGCACCCAAAGGTAGAAAAACTGAGTGGGTGATGCATGAGTTTCGCATTGAAGGGCCCCATGGACCTCCTAAAGTTTCTTCTTCTAAGGAAGACTGGGTTTTGTGTAGAGTGTTCTACAAAAACAGAGAAGTATCAGCCAAAGTTAGCATGGGTAGCTGCTATGAAGACACAGGGTCTTCATCTCTTCCTGCATTAATGGATTCTTACATTAGTTTTGATCAAACTCAAGGTCATGCAGATGAGTTTGAGCAAGTGCCCTGCTTCTCCATTTTGTCTCAGAACCAACAACAAAACCCCATTTTCAATCACATGACAAGCATGGACCCTAAATTACCTGCAACTTCTGGATATGGAGGAGCACCAAATTTGGGTTACTGTTTAGACCCTTTATCCTGTGACAGAAAAGTGTTGAAAGCTGTTTTGAGTCAGATCACAAAGATGGAAAGGAATCCTCTGAACCAAAGTCTGAAAGGCTCTCCAAGCTTTGGAGAAGGAAGCTCAGAGAGTTACTTATCTGAAGTGGGTATGCCTCACCTTTGGAACAATTACTGA 906 0.4448 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHNDSLLMIDVDLNKCEPWDIPETACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKVSSSKEDWVLCRVFYKNREVSAKVSMGSCYEDTGSSSLPALMDSYISFDQTQGHADEFEQVPCFSILSQNQQQNPIFNHMTSMDPKLPATSGYGGAPNLGYCLDPLSCDRKVLKAVLSQITKMERNPLNQSLKGSPSFGEGSSESYLSEVGMPHLWNNY 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00922 301 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Viun1g00922 301 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Viun1g00922 301 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 211 - -
Viun1g00922 301 FunFam NAC domain-containing protein 100-like 20 162 - -
Viun1g00922 301 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Viun1g00922 301 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00922 Viun-Chr1 12677500 12681754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00922 2 299 NAC Transcription Factor Family AT1G56010 60.938 3.32e-127 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun1g00922 NAM 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00922 - - gmx:100301890 578.941