Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00900 ATGAAATCCGGCAGAGACAAAGAGAAAGAGAACGATCGCTGCATCAGTTCGCATATGCAGACTCTCCATCGCCGTCTTCTCCAGGCCCTAAACCTTGGCACCAGACATTTTGATGAGAAGACAAATAGGTGGAGGTGGCAGTGCGCCAACATTGAAGTGCAGAAAAATGTGCTACGATCAATTGGTGCCTTTCTTGATTCCTTATCGGGAGATGCACGTGCTGCACGTAATGCTGTTGTTAAGGAATCTGTTCCTGATATTTTGGGAGCATTATTATGGATTCTTCAATGCAAAAGTGAGGCTTTATTAAGCATGGCATTAAATGTTGCTGTGAAGTTGGTTAGTGTTCTGCCTAATCCATTATTGCAATCACATATGTTGGATCTTGTTTATTGTCTATCATCCTTGCTATCTTCACATCAAGTAGAAGTTGCTATACCCTGTGCTACCACTTTGAATTTTGTAATCTCAAATTTGAATGCTACAAGTGAGAAGGAAGTTATGGAAGCACTGAAAGAAACAGAGGCGTCCCTTCGGATTGTTGGAAATATAAAGGATTTTGCTGAAGGTGTAAAGAAAATTGAGTATTTTGAAGAGATGACTTTACTTTTGAGCACAATACTGTGGCGCTGGCATCCGTCTAGGTTCCCTGTTTGTAATGATGTAGTACTTATGAAAGTTTTAGCAAATATCCATACAAAGGCAGATAGTTCTATTAAACTTGCACTTCTAAAGTTGTACACGTCTATAGCTTTATGTGATTCTGCAGCAAGAAGACTTGTAGAGGATGAAGAAGTATTTCCTCAAATGTTTGTGCAGGCAATGGGAAAATCAAACCCTCATGCTATTCGGATAGAGGGGTTTAGGCTTGCTCAATGCCTATTGAGATCCCAAGATAATTGTTTAAAAGTTGTTGGTTTGTGTGGTGAAGCTCTTGTTGAGGCCATAATTTGTGGAATGACAGAAACTAGGCTGAGTTCTAAAAAAATTGGAAACAACCATGAGTCTTTGTCAGTGGAAGCTTGCCAGTTGGCTCTAATAACTCGTTGGGCAGGTGATCATCATACCAACTTTTGGAAACAAGGAATTGATAGAGTCCTTCTTAATCTTCTGATTGAAAATATTCAAGACCAATTGTTTGAACCTGTCTTGTCTTTGGAAAAACAAATATATATGGCAAAAGAGGGATTAAAAGCCAATTGTCATCTTGGTCTTAGGAGTTATGTGTGGGACATTCTTGGGTGGCTTACAATTCATTGTGGAGAAAATTTAAACCCTTATACTCGTGGTAGTGAGCTCTGCATCAACTTACTAATTACATGTGCATGCTTGAGTTTTGTGGATACACTTGAAAAATGGTGCAGAATTTGTCAAAAGGATATTGATGATCATTTTCAAAGTGAACCAGTATCAAGGGCTGTTCTAATGATGATTCGTTCTCCATGTAATTCCATCTCCTCACACACTAGATTCTTATTATCAGATGTACTGAAGGTGAAAGGCATGCCATGCTTGAAAAGCTTACTACATACTCTAGATTATACATCATCCCTAGAAAGCTATGGATCATTTGATAAACTTCAACTGGTTATTAATTTAATTGGGTTTACTTGTCTTTCAAGTTTACCACAATACCCAAGATGTATCATTGAGAGCAAAGGGATAAAGGTAGTTGTTCTTCTTCTGAAACGATGCTTAAATAATGACATTCATATTGAAAGGCAAAACTTTACTCCTCATTTGTATACAACATGCCATGAAAGGTCTTGTTGCTTTTTTGATAAAGAAGATTGGGAAGGCTCCAATGTTCTCTTCTTTTATAGTTTGTTGGGCTTAACTGAAATTCTTCATCATTGTGACCTTTTACAAGAGAATTCTCCACAGTTTTCTAGAGAGGTGACAAACATTACACCACAATTAGTTAGCAAACTTCAAGAGATCTGTAAAAGAAAATCTTTCAGTCCTGGTGTGAGATGGTATGTTTCTTATATTCTAACTTATTTTGGATATTATGGTTTCCCAAGTGAATTAGCCAAAAGGATCCGAGAATCTCTCAATAAGGAAGAATACTCAGATATGAAGCTTGTCTTAGCAAATGGGGAATCTCTAAATGTTCATGTTGTTATTCTTGCTGTTCGATGTCCATCACTACTGCCTCCTCAATTGTTAAAGAGTTCTAAAGAGATACCAGATGAGTTTGTCAGAGAGACCGTGAGAGAAGTTCGTCTATCTTCTCATGTTGATTATGAAGCATTGGTATTGTTGTTGGAATATGTATACTTGGGATACTTACATGCTAGTGAAGAAACAGCAAAGAAGCTAAAAATTCTTGCTAAGCGCTGCAATCTACAGCCTTTGTTCCAAATGCTTCATAGGCAGCGTCCAAAATGGGGCTTACCTTTCCCCAGCGTTAATCTTACTTCAGCTTTTGGTTTAGCTGGAAGTTGTTTTTCGGATGTCATATTGGCAGCTAAATCAAATGAGCTTGTTGGGTGGACATGCGATATTTGTTCTGACACAGTACCCCATATGCATGTTCACAAAGTTATATTGCAGTCTGGTTGTGATTATCTACAAGGTTTGTTCCGGTCAGGAATGCAAGAAAGTCATTCACAAGTAATAAAAGTTGATATTAGCTGGCAAGCATTGATTAAACTAGTGCAGTGGTTTTATTCTGATGAGCTGCCTGGTCCTCCATCTGGATGCTTGTGGGATAATATGGATGATCAAGAAAAGCTATTTAATCTACAACCGTATGTGGAGCTTTATTGGCTTGCTGAGTTCTGGATTTTGGAAAATATTCAGGAAGCTTGCTTTAATGTTATTATGTCTTGTCTTGATTCTTCCTGGCGGTTGTCCATTAAAATAATCAAAATGGCTTATAATCTCTCTTTGTGGAAGTTAGTTGATATTGCGGCAAATCTCATGGCTCCTTCATATCGTCAATTACGAGATTCTGGTGAACTAGAAGAATTTGATGATGCGCTAGTGCACTTGATTTATTCTGCTTCTATTCAACTTAACTAA 3027 0.3786 MKSGRDKEKENDRCISSHMQTLHRRLLQALNLGTRHFDEKTNRWRWQCANIEVQKNVLRSIGAFLDSLSGDARAARNAVVKESVPDILGALLWILQCKSEALLSMALNVAVKLVSVLPNPLLQSHMLDLVYCLSSLLSSHQVEVAIPCATTLNFVISNLNATSEKEVMEALKETEASLRIVGNIKDFAEGVKKIEYFEEMTLLLSTILWRWHPSRFPVCNDVVLMKVLANIHTKADSSIKLALLKLYTSIALCDSAARRLVEDEEVFPQMFVQAMGKSNPHAIRIEGFRLAQCLLRSQDNCLKVVGLCGEALVEAIICGMTETRLSSKKIGNNHESLSVEACQLALITRWAGDHHTNFWKQGIDRVLLNLLIENIQDQLFEPVLSLEKQIYMAKEGLKANCHLGLRSYVWDILGWLTIHCGENLNPYTRGSELCINLLITCACLSFVDTLEKWCRICQKDIDDHFQSEPVSRAVLMMIRSPCNSISSHTRFLLSDVLKVKGMPCLKSLLHTLDYTSSLESYGSFDKLQLVINLIGFTCLSSLPQYPRCIIESKGIKVVVLLLKRCLNNDIHIERQNFTPHLYTTCHERSCCFFDKEDWEGSNVLFFYSLLGLTEILHHCDLLQENSPQFSREVTNITPQLVSKLQEICKRKSFSPGVRWYVSYILTYFGYYGFPSELAKRIRESLNKEEYSDMKLVLANGESLNVHVVILAVRCPSLLPPQLLKSSKEIPDEFVRETVREVRLSSHVDYEALVLLLEYVYLGYLHASEETAKKLKILAKRCNLQPLFQMLHRQRPKWGLPFPSVNLTSAFGLAGSCFSDVILAAKSNELVGWTCDICSDTVPHMHVHKVILQSGCDYLQGLFRSGMQESHSQVIKVDISWQALIKLVQWFYSDELPGPPSGCLWDNMDDQEKLFNLQPYVELYWLAEFWILENIQEACFNVIMSCLDSSWRLSIKIIKMAYNLSLWKLVDIAANLMAPSYRQLRDSGELEEFDDALVHLIYSASIQLN 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00900 1008 ProSiteProfiles BTB domain profile. 818 899 IPR000210 GO:0005515
Viun1g00900 1008 SMART BTB_4 691 798 IPR000210 GO:0005515
Viun1g00900 1008 SMART BTB_4 818 946 IPR000210 GO:0005515
Viun1g00900 1008 Pfam BTB/POZ domain 843 906 IPR000210 GO:0005515
Viun1g00900 1008 Pfam BTB/POZ domain 683 790 IPR000210 GO:0005515
Viun1g00900 1008 ProSiteProfiles BTB domain profile. 691 768 IPR000210 GO:0005515
Viun1g00900 1008 CDD BTB_POZ_ZBTB_KLHL-like 817 895 - -
Viun1g00900 1008 Gene3D Potassium Channel Kv1.1; Chain A 812 986 IPR011333 -
Viun1g00900 1008 Gene3D Potassium Channel Kv1.1; Chain A 672 793 IPR011333 -
Viun1g00900 1008 PANTHER OS06G0674800 PROTEIN 5 1007 IPR044953 -
Viun1g00900 1008 SUPERFAMILY POZ domain 817 943 IPR011333 -
Viun1g00900 1008 Gene3D - 24 381 IPR011989 -
Viun1g00900 1008 SUPERFAMILY POZ domain 670 790 IPR011333 -
Viun1g00900 1008 SUPERFAMILY ARM repeat 50 691 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00900 Viun-Chr1 12437855 12448637 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Viun1g00900 BTB 1.2e-06 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00900 - - gmx:100786565 1679.46