Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00899 ATGAAATCCGGCAGAGACAAAGAGAAAGAGAACGATCGCTGCATCAGTTCGCATATGCAGACTCTCCATCGCCGTCTTCTCCAGGCCCTAAACCTTGGCACCAGACATTTTGATGAGAAGACAAATAGGTGGAGGTGGCAGTGCGCCAACATTGAAGTGCAGAAAAATGTGCTACGATCAATTGGTGCCTTTCTTGATTCCTTATCGGGAGATGCACGTGCTGCACGTAATGCTGTTGTTAAGGAATCTGTTCCTGATATTTTGGGAGCATTATTATGGATTCTTCAATGCAAAAGTGAGGCTTTATTAAGCATGGCATTAAATGTTGCTGTGAAGTTGGTTAGTGTTCTGCCTAATCCATTATTGCAATCACATATGTTGGATCTTGTTTATTGTCTATCATCCTTGCTATCTTCACATCAAGTAGAAGTTGCTATACCCTGTGCTACCACTTTGAATTTTGTAATCTCAAATTTGAATGCTACAAGTGAGAAGGAAGTTATGGAAGCACTGAAAGAAACAGAGGCGTCCCTTCGGATTGTTGGAAATATAAAGGATTTTGCTGAAGGTGTAAAGAAAATTGAGTATTTTGAAGAGATGACTTTACTTTTGAGCACAATACTGTGGCGCTGGCATCCGTCTAGGTTCCCTGTTTGTAATGATGTAGTACTTATGAAAGTTTTAGCAAATATCCATACAAAGGCAGATAGTTCTATTAAACTTGCACTTCTAAAGTTGTACACGTCTATAGCTTTATGTGATTCTGCAGCAAGAAGACTTGTAGAGGATGAAGAAGTATTTCCTCAAATGTTTGTGCAGGCAATGGGAAAATCAAACCCTCATGCTATTCGGATAGAGGGGTTTAGGCTTGCTCAATGCCTATTGAGATCCCAAGATAATTGTTTAAAAGTTGTTGGTTTGTGTGGTGAAGCTCTTGTTGAGGCCATAATTTGTGGAATGACAGAAACTAGGCTGAGTTCTAAAAAAATTGGAAACAACCATGAGTCTTTGTCAGTGGAAGCTTGCCAGTTGGCTCTAATAACTCGTTGGGCAGGTGATCATCATACCAACTTTTGGAAACAAGGAATTGATAGAGTCCTTCTTAATCTTCTGATTGAAAATATTCAAGACCAATTGTTTGAACCTGTCTTGTCTTTGGAAAAACAAATATATATGGCAAAAGAGGGATTAAAAGCCAATTGTCATCTTGGTCTTAGGAGTTATGTGTGGGACATTCTTGGGTGGCTTACAATTCATTGTGGAGAAAATTTAAACCCTTATACTCGTGGTAGTGAGCTCTGCATCAACTTACTAATTACATGTGCATGCTTGAGTTTTGTGGATACACTTGAAAAATGGTGCAGAATTTGTCAAAAGGATATTGATGATCATTTTCAAAGTGAACCAGTATCAAGGGCTGTTCTAATGATGATTCGTTCTCCATGTAATTCCATCTCCTCACACACTAGATTCTTATTATCAGATGTACTGAAGGTGAAAGGCATGCCATGCTTGAAAAGCTTACTACATACTCTAGATTATACATCATCCCTAGAAAGCTATGGATCATTTGATAAACTTCAACTGGTTATTAATTTAATTGGGTTTACTTGTCTTTCAAGTTTACCACAATACCCAAGATGTATCATTGAGAGCAAAGGGATAAAGGTAGTTGTTCTTCTTCTGAAACGATGCTTAAATAATGACATTCATATTGAAAGGCAAAACTTTACTCCTCATTTGTATACAACATGCCATGAAAGGTCTTGTTGCTTTTTTGATAAAGAAGATTGGGAAGGCTCCAATGTTCTCTTCTTTTATAGTTTGTTGGGCTTAACTGAAATTCTTCATCATTGTGACCTTTTACAAGAGAATTCTCCACAGTTTTCTAGAGAGGTGACAAACATTACACCACAATTAGTTAGCAAACTTCAAGAGATCTGTAAAAGAAAATCTTTCAGTCCTGGTGTGAGATGGTATGTTTCTTATATTCTAACTTATTTTGGATATTATGGTTTCCCAAGTGAATTAGCCAAAAGGATCCGAGAATCTCTCAATAAGGAAGAATACTCAGATATGAAGCTTGTCTTAGCAAATGGGGAATCTCTAAATGTTCATGTTGTTATTCTTGCTGTTCGATGTCCATCACTACTGCCTCCTCAATTGTTAAAGAGTTCTAAAGAGATACCAGATGAGTTTGTCAGAGAGACCGTGAGAGAAGTTCGTCTATCTTCTCATGTTGATTATGAAGCATTGGTATTGTTGTTGGAATATGTATACTTGGGATACTTACATGCTAGTGAAGAAACAGCAAAGAAGCTAAAAATTCTTGCTAAGCGCTGCAATCTACAGCCTTTGTTCCAAATGCTTCATAGGCAGCGTCCAAAATGGGGCTTACCTTTCCCCAGCGTTAATCTTACTTCAGCTTTTGGTTTAGCTGGAAGTTGTTTTTCGGATGTCATATTGGCAGCTAAATCAAATGAGCTTGTTGGGTGGACATGCGATATTTGTTCTGACACAGTACCCCATATGCATGTTCACAAAGTTATATTGCAGTCTGGTTGTGATTATCTACAAGGTTTGTTCCGGTCAGGAATGCAAGAAAGGCATCAGAAGGACCTGGGATGA 2628 0.382 MKSGRDKEKENDRCISSHMQTLHRRLLQALNLGTRHFDEKTNRWRWQCANIEVQKNVLRSIGAFLDSLSGDARAARNAVVKESVPDILGALLWILQCKSEALLSMALNVAVKLVSVLPNPLLQSHMLDLVYCLSSLLSSHQVEVAIPCATTLNFVISNLNATSEKEVMEALKETEASLRIVGNIKDFAEGVKKIEYFEEMTLLLSTILWRWHPSRFPVCNDVVLMKVLANIHTKADSSIKLALLKLYTSIALCDSAARRLVEDEEVFPQMFVQAMGKSNPHAIRIEGFRLAQCLLRSQDNCLKVVGLCGEALVEAIICGMTETRLSSKKIGNNHESLSVEACQLALITRWAGDHHTNFWKQGIDRVLLNLLIENIQDQLFEPVLSLEKQIYMAKEGLKANCHLGLRSYVWDILGWLTIHCGENLNPYTRGSELCINLLITCACLSFVDTLEKWCRICQKDIDDHFQSEPVSRAVLMMIRSPCNSISSHTRFLLSDVLKVKGMPCLKSLLHTLDYTSSLESYGSFDKLQLVINLIGFTCLSSLPQYPRCIIESKGIKVVVLLLKRCLNNDIHIERQNFTPHLYTTCHERSCCFFDKEDWEGSNVLFFYSLLGLTEILHHCDLLQENSPQFSREVTNITPQLVSKLQEICKRKSFSPGVRWYVSYILTYFGYYGFPSELAKRIRESLNKEEYSDMKLVLANGESLNVHVVILAVRCPSLLPPQLLKSSKEIPDEFVRETVREVRLSSHVDYEALVLLLEYVYLGYLHASEETAKKLKILAKRCNLQPLFQMLHRQRPKWGLPFPSVNLTSAFGLAGSCFSDVILAAKSNELVGWTCDICSDTVPHMHVHKVILQSGCDYLQGLFRSGMQERHQKDLG 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00899 875 Gene3D Potassium Channel Kv1.1; Chain A 672 793 IPR011333 -
Viun1g00899 875 PANTHER OS06G0674800 PROTEIN 5 872 IPR044953 -
Viun1g00899 875 SUPERFAMILY ARM repeat 52 424 IPR016024 -
Viun1g00899 875 ProSiteProfiles BTB domain profile. 691 768 IPR000210 GO:0005515
Viun1g00899 875 Pfam BTB/POZ domain 683 790 IPR000210 GO:0005515
Viun1g00899 875 SMART BTB_4 691 798 IPR000210 GO:0005515
Viun1g00899 875 Gene3D - 24 384 IPR011989 -
Viun1g00899 875 SUPERFAMILY POZ domain 670 790 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00899 Viun-Chr1 12437855 12448637 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Viun1g00899 BTB 5e-06 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00899 - - gmx:100786565 1461.82