Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00890 ATGTTCATAGCCACACCACTCCACACCACTAACCTCGATCTGCATCCTTGTTTCTCCTGTTATCTCTTCTTGAGACCCCAAATGGCTTCTGCCAGTGCCACCACTCTCTTCTCCTCTAACCCCATGTTTCCCTCTGACTACCACTCTCTCTCCCCCTCTCCAACCATTCCTAAATCCTTCACCGGCCTCTGCAAGCCTTTCCATTCGAGGGTTCCCACTTCCATCCCCTTCTTCCATTGCAGAAGACCAAAGTTCTTTGTCACAGCTTCTGTAATAAAGTGGAGATGTCCAAAGCAAACCCTCCCTCCCAATTCAGATACTGGTTTCCAAAAGAAACTCCTCTATCTAGAATCCATTGGCATCGACTCTTTCTCACTAATTGAAAACCATCCAATGCTGATCACTACCTCTCTTACAGACATAAAATCGACTGTGGAATACATCACCTCCATGGATTTCACTGCGACCGAGTTCCGGCGTATGGTTGGCATGTGCCCTGAGATTCTGACCACCAATGTCTCCGACATAATACCTGTCTTCACCTTCCTTCATAGCGAGGTACACGTGTGTTGTTCAGACATTAAGCGGGTTATAAATCGCCGTCCCAGGTTGCTTGTCTGCAGTGTTAGTAAGAGACTTCGTCCTACCCTATACTTCCTCCAAAGTATTGGCATAGAAGAGGTAAACAAGCACACTGACTTGCTATCATGTAGTGTTGAAGAAAAGTTCATGCCCAGAGTTGATTACTTTGAGAATATTGGGTTTTCTCGCCGTGATGCAACTATAATGTTTCGCAGATTTCCTCAGCTGTTTTGTTATAGTATTAAAAATAATTTGGAGCCTAAATACAGTTACTTTGTGGTGGAGATGGGGAGAGATTTGAAGGAGCTGATAGAATTTCCACAATATTTCTCATTTAGCCTTGAGAATAGAATTAAGCCTAGGCATAAAAAGTGTGTAGAAATGGGGGTCTGTTTTCCTCTCCCTGCTTTGTTAAAAACAAAGGAAGTGAAATTTCAAAGTAGATTGGAAGTGTTTGTAAATTCTTCAACACCCTTGAAAACATCCCCTCTGTGGTGTGCTGGCTGTGATCTTTATGAAGTATAG 1107 0.4336 MFIATPLHTTNLDLHPCFSCYLFLRPQMASASATTLFSSNPMFPSDYHSLSPSPTIPKSFTGLCKPFHSRVPTSIPFFHCRRPKFFVTASVIKWRCPKQTLPPNSDTGFQKKLLYLESIGIDSFSLIENHPMLITTSLTDIKSTVEYITSMDFTATEFRRMVGMCPEILTTNVSDIIPVFTFLHSEVHVCCSDIKRVINRRPRLLVCSVSKRLRPTLYFLQSIGIEEVNKHTDLLSCSVEEKFMPRVDYFENIGFSRRDATIMFRRFPQLFCYSIKNNLEPKYSYFVVEMGRDLKELIEFPQYFSFSLENRIKPRHKKCVEMGVCFPLPALLKTKEVKFQSRLEVFVNSSTPLKTSPLWCAGCDLYEV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00890 368 Gene3D Transcription termination factor 3, mitochondrial 168 349 IPR038538 -
Viun1g00890 368 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Viun1g00890 368 SMART mt_12 261 293 IPR003690 GO:0003690|GO:0006355
Viun1g00890 368 SMART mt_12 159 190 IPR003690 GO:0003690|GO:0006355
Viun1g00890 368 SMART mt_12 227 256 IPR003690 GO:0003690|GO:0006355
Viun1g00890 368 SMART mt_12 124 154 IPR003690 GO:0003690|GO:0006355
Viun1g00890 368 SMART mt_12 195 226 IPR003690 GO:0003690|GO:0006355
Viun1g00890 368 FunFam Transcription termination factor MTEF1, chloroplastic 183 347 - -
Viun1g00890 368 PANTHER CGI-12 PROTEIN-RELATED 124 347 IPR003690 GO:0003690|GO:0006355
Viun1g00890 368 Pfam mTERF 188 340 IPR003690 GO:0003690|GO:0006355
Viun1g00890 368 Pfam mTERF 105 193 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Viun1g00890 mTERF 6.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00890 K15032 - gmx:100794678 628.246