Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00887 ATGGGGAAAGGAAGAGCACCATGTTGTGACAAGACTCAAGTGAAGAGAGGTCCGTGGAGCCCTGCAGAAGATCTTAAACTCATAGCCTTTATCCAGAAATATGGCCATGAAAACTGGCGCGCTCTTCCAAAACAAGCTGGGCTTCTGAGATGTGGAAAAAGTTGTCGTTTGAGATGGATTAATTATCTAAGACCTGATGTGAAGAGAGGCCATTTTACACCAGAGGAAGAGGAAACCATCATAAGGCTTCACAAGGCCATGGGAAACAAGTGGTCAAAGATTGCATCACGTTTGCCTGGTAGGACAGACAATGAGATCAAGAATGTGTGGAACACCCACTTAAAGAAAAGGTTGGCCCCTAAAAAAACTTCAGAATCAAGTACAGAGGAATCCAAGCCAGAATCAACAATAACTTCCACCTCTTCCTCTTCCTCTCAGTCATTTTTCTCAATTGAGAGGCTAAATTCGGATAAGAGCACAACACCTTATAATGAGGCATTTTGTGACCAATCAGAGCAACTATCTATGGAAGATAAAATTGAGCAGGATTCAGAAAAAGCAGTGTCAAGTGAACTAATTGGCATGACTGAGGATCCAAAAGAGTCATCAGCTTCATTTTCTTGTGAGTCAAATATTGTGAACTCAATCCAGAATGTTGCACACAAACCAGAAGAGAAATTGGAGTCTCCAATATCTGTATCAATATATTCTGTTGAGACAGATATTGTAAATTCAGACCAGAAAGTTACACACAAACCAGAACAACAACTGGCTTCTCCATTATCCTACCTAGGAGCTTATGATGTCGACCATATTTTAGAAGAGGTGGATAAACCAGACCACCTGATTGAAATTCCATGGGAACCAGATTATGAGTTTTGGAAGTTGTTAGATGATGATAGCCCTGGATCCTTTCAATCAAACGAAGTCCAATTAGGTGAGTTCTCAGCCAACCAAAACATCATTCTTGGAGAAGAGGGTGAAGCAAGGAAGTGGACCCATGATTTTGAGAATGAGTTTGGAGTAGTAGGTGAGATAAAGGAGTCAAACAAGGATCATAATTTCCTACCAAAGAACTATGCAGTTGAGCCAGAAATGGACCACACTCAGGCATTTGATTTCGATGGTATGACACAAGCAGAATCTGAATTGGACTTTGGTTCTATACAATTATGGCCCTCTTCCCCTCAAAATACTAGTCTCTACTTTAATACAGACCAGTAG 1224 0.4085 MGKGRAPCCDKTQVKRGPWSPAEDLKLIAFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGHFTPEEEETIIRLHKAMGNKWSKIASRLPGRTDNEIKNVWNTHLKKRLAPKKTSESSTEESKPESTITSTSSSSSQSFFSIERLNSDKSTTPYNEAFCDQSEQLSMEDKIEQDSEKAVSSELIGMTEDPKESSASFSCESNIVNSIQNVAHKPEEKLESPISVSIYSVETDIVNSDQKVTHKPEQQLASPLSYLGAYDVDHILEEVDKPDHLIEIPWEPDYEFWKLLDDDSPGSFQSNEVQLGEFSANQNIILGEEGEARKWTHDFENEFGVVGEIKESNKDHNFLPKNYAVEPEMDHTQAFDFDGMTQAESELDFGSIQLWPSSPQNTSLYFNTDQ 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00887 407 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 207 - -
Viun1g00887 407 SMART sant 68 116 IPR001005 -
Viun1g00887 407 SMART sant 15 65 IPR001005 -
Viun1g00887 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Viun1g00887 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Viun1g00887 407 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Viun1g00887 407 MobiDBLite consensus disorder prediction 117 143 - -
Viun1g00887 407 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Viun1g00887 407 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Viun1g00887 407 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Viun1g00887 407 CDD SANT 18 63 IPR001005 -
Viun1g00887 407 FunFam Transcription factor RAX3 9 69 - -
Viun1g00887 407 Gene3D - 71 142 - -
Viun1g00887 407 Gene3D - 16 68 - -
Viun1g00887 407 CDD SANT 72 114 IPR001005 -
Viun1g00887 407 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00887 Viun-Chr1 12113046 12116122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00887 1 120 MYB Transcription Factor Family AT1G56160 81.667 7.91e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun1g00887 Myb_DNA-binding 2.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00887 K09422 - gmx:100101836 569.311