Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00880 ATGGCTGCTCAATTGCAAAAGTATGACATGAGGAAGAAGCTTCATGGTGATTCTTCAGGGGCTGAACTCAATAATTCCAATACGGTTCCCTCGAAGGGCGCAAGTTCCCCATCTGATGCAAGATCATGTGTATCATCGATAGGAGATGCTTCTGGTAGTGTTAAGGATGTTGATGTGGATCATGAGTACTTGTCCACAGATCAAGGTGTTCCTTATCCTGCCGGTGGCTATTATGGTTACTACTATCCAGGTTATGGTGGTTTCTTTGGAGAGTCAGACAACCAGGGGTACTATGTTGGTGCAGATGCCATGGATCTTCAGTACCCTGTCATGCAAGCAGATAATGGATCTTATGTCTATCTCGTGCCAGGATTTCAGACTGGCTACCCTTCATACTTTCCTATAGGTACAGCTGGTGTTGAAGGACAGTATAATGTCTACCACCCTGGATCCATCTTTCAACACCCAATTGGATCACCTGGTTATTTACCAACCTCTCTATCCTATGGAGAATTACCACCATCAACATACTCATGGGATTCTTCCCTGATCACACAAGATGGGTTTCAAGGACATGTTTATAATGATCTGGCTGGTAAACCAAATGGTAGATCTAATTTGTCTTCCCAGAGTCATTCTGGTGGTGTTGTATCAAAGTCTTCACCCTCATCTAACTCGGCAGAATTGAAGGGCTCAACACCATTATTGGAGGTCACATCAACTCATGTTAAGAGAAACCAGCCAAAACAAACAAACAAAGCACCTGTTTCGGTCCTCCATTCACCTGTTGCCAAGTTTCCCACATACAATCAAGGGAAGAGTGGATTCCTGTACCCAAACAACTTGCTTAGTGTGAAAACAAATACAAAGGGCTGGGTTAGTACTGATAAGTTGAAAAACAGAAACAAGGTCAATGATTCACTTAATGAGCAGAATCAAGGTCCTAGAACAGCCAATGCAAAAGGTGGATTAGTGTCTGGAGGTAACTCTGTGAGAAACTTGGCCCTAGGTGGGAGTGGAAATGTTAGTAGCAAAATCAGGACAGATCAATACAACCTTCATGATTTTCCAACCAAATACGACCATGCACTTTTCTTTGTCATCAAATCATACAGTGAAGATGATATCCACAAGAGCATCAAATACAACGTGTGGGCAAGTACTCCTAATGGGAACAAGAGGCTGGATGGTGCATTTCAGGATGCACAGAAGAGAATGGAAGAGAAAGGATGCAAGTGCCCTGTGTTCCTTTTCTTTTCGGTCAATGCCAGCGGTCAATTTTGTGGAGTAGCTGAGATGACTGGTCGAGTTGATTTCAACAAAAGTATGGATTTCTGGCAACAAGATAAATGGAATGGATACTTTCCTGTGAAATGGCACATTATAAAGGATGTTCCAAATCCTCAACTACGGCACATAATACTTGAGAATAATGATCACAAGCCCGTCACAAATAGTAGAGACACACAAGAGGTGAGTTTTCCCCAAGGTGTTGAAATGCTCAACATTTTCAAGAACTATGTGGCAAGAACTTCCATATTGGATGACTTTGAGTTTTACGAAAGCCGCCAGAAGGTCTTGCAGGAGAAGAAAACAAGGCAATCTATTCCCCATACCAGTATACAGCATGTAGATGAATTAACCACAACACTAGGGTCAATAGAGCTATCATCATCATCATCATCTGTGAAGAACATGGAGGATCCTAAGGTGGTTGAGAAAATGAATGACTGA 1734 0.4233 MAAQLQKYDMRKKLHGDSSGAELNNSNTVPSKGASSPSDARSCVSSIGDASGSVKDVDVDHEYLSTDQGVPYPAGGYYGYYYPGYGGFFGESDNQGYYVGADAMDLQYPVMQADNGSYVYLVPGFQTGYPSYFPIGTAGVEGQYNVYHPGSIFQHPIGSPGYLPTSLSYGELPPSTYSWDSSLITQDGFQGHVYNDLAGKPNGRSNLSSQSHSGGVVSKSSPSSNSAELKGSTPLLEVTSTHVKRNQPKQTNKAPVSVLHSPVAKFPTYNQGKSGFLYPNNLLSVKTNTKGWVSTDKLKNRNKVNDSLNEQNQGPRTANAKGGLVSGGNSVRNLALGGSGNVSSKIRTDQYNLHDFPTKYDHALFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDGAFQDAQKRMEEKGCKCPVFLFFSVNASGQFCGVAEMTGRVDFNKSMDFWQQDKWNGYFPVKWHIIKDVPNPQLRHIILENNDHKPVTNSRDTQEVSFPQGVEMLNIFKNYVARTSILDDFEFYESRQKVLQEKKTRQSIPHTSIQHVDELTTTLGSIELSSSSSSVKNMEDPKVVEKMND 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00880 577 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 94 540 IPR045168 -
Viun1g00880 577 MobiDBLite consensus disorder prediction 304 326 - -
Viun1g00880 577 MobiDBLite consensus disorder prediction 19 49 - -
Viun1g00880 577 MobiDBLite consensus disorder prediction 1 52 - -
Viun1g00880 577 MobiDBLite consensus disorder prediction 195 256 - -
Viun1g00880 577 MobiDBLite consensus disorder prediction 556 577 - -
Viun1g00880 577 ProSiteProfiles YTH domain profile. 363 504 IPR007275 GO:0003723
Viun1g00880 577 MobiDBLite consensus disorder prediction 201 256 - -
Viun1g00880 577 Gene3D ph1033 like domains 341 519 - -
Viun1g00880 577 CDD YTH 365 504 IPR007275 GO:0003723
Viun1g00880 577 MobiDBLite consensus disorder prediction 305 326 - -
Viun1g00880 577 FunFam YTH domain family 1, isoform CRA_a 342 519 - -
Viun1g00880 577 Pfam YT521-B-like domain 365 505 IPR007275 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00880 Viun-Chr1 11751945 11756413 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00880 K20102 - gmx:100791190 998.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g00880 1 11751945 11756413 Viun1g00880 1 11751945 11756413 ECH