Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00874 ATGGGCAACCTCTTTGGAAAAAGTAAAAAGCATAGCAGTCATAGTTCAAGCCATGATAAAGGAAGAGGTGGAAGAATCTTCACTAACGTGACCACAAGAGGTTTACCACCCAATTTTCCATCGCAAATATCTTCTTCGTTGCCACCACCACCAATATTATATCCATCTCTCGAACCACCTTCTTCGACGGCACCACCACCACCACCACCGGTGCGATCACAATCCATTTCTAAGAAACCAAGTTTTGTGAGAGTTGACTCTAAACAAAGCTCTTCAGTCATGGACAAGAAGCAATCTGCAGCAAAAAAGTATGCTCTTATCCGTGACAACTTCTCTACCCTTGAACAGGTGACAACAGCCTTGAGGAAAGAAGGATTAGAATCCTCAAATCTCATCCTTGGAATTGATTTTACAAAGAGTAATGAATGGACTGGCAGAATCTCATTCAATAAAAGAAGCCTGCATGCTATTGGAACTACACCTAATCCTTATGAGAAGGCCATCTCTATTATTGGCAAGACTTTGGCTCCCTTTGATGATGACAACTTGATTCCATGCTTTGGCTTTGGTGATGCTACCACCCATGATCAAGAAGTGTTTAGCTTTCACACTGATCATTCACCTTGCCATGGCTTTGAGGAAGTCTTGGCTTGCTACCAGAAAATAGTTCCCAACTTGAAACTTTCAGGACCAACTTCTTATGCTCCTGTGATTGAAGCTGCCATAGACATAGTTGAGAAAAGTCGTGGCCAATTCCATGTGTTGGTTATAGTTGCTGATGGCCAGGTTACAAGAAGTGTTAACACTGGAGATGGAGAACTAAGTCCTCAGGAAGAGAAGACAATTAAAGCAATTGTTGATGCAAGTGCATATCCTCTTGCAATAATTCTTGTTGGAGTTGGTGATGGGCCTTGGGAAGACATGAGAAAGTTTGATGACAGGATACCTGCACGCGATTATGACAATTTCCAGTTTGTTAATTTCACTGAAATAATGTCGAGAAACATAAGCCCCTCGGAGAAAGAAGCAGCTTTTGCTCTGGCTGCTCTCATGGAGATTCCCTTCCAATATAAAGCAACCATGGAATTTGGAATACTCGGACGTGTGACAGGAAGAGCAAAGAGAATAGTTCCAAAAGCTCCTCCTCTACCCTATTCAAGACCTGCACCCTCACTAGCTCGTCTTCCAACCAATGCACCACCTTCCTCCATTGATGACCACAACCAATCGGTTTGCCCTGTTTGTTTGACCAATCCAAGAGACTTGGCCTTTGGGTGTGGCCACATGACTTGCAGGGATTGTGGATACAAGTTAACGAATTGTCCCATGTGTCGAGAGAGGATCACTACTCGTCTCAGGGTGTACAGTGGATGA 1374 0.4352 MGNLFGKSKKHSSHSSSHDKGRGGRIFTNVTTRGLPPNFPSQISSSLPPPPILYPSLEPPSSTAPPPPPPVRSQSISKKPSFVRVDSKQSSSVMDKKQSAAKKYALIRDNFSTLEQVTTALRKEGLESSNLILGIDFTKSNEWTGRISFNKRSLHAIGTTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHTDHSPCHGFEEVLACYQKIVPNLKLSGPTSYAPVIEAAIDIVEKSRGQFHVLVIVADGQVTRSVNTGDGELSPQEEKTIKAIVDASAYPLAIILVGVGDGPWEDMRKFDDRIPARDYDNFQFVNFTEIMSRNISPSEKEAAFALAALMEIPFQYKATMEFGILGRVTGRAKRIVPKAPPLPYSRPAPSLARLPTNAPPSSIDDHNQSVCPVCLTNPRDLAFGCGHMTCRDCGYKLTNCPMCRERITTRLRVYSG 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00874 457 PANTHER COPINE FAMILY PROTEIN 1 78 432 - -
Viun1g00874 457 ProSiteProfiles Zinc finger RING-type profile. 412 445 IPR001841 -
Viun1g00874 457 Pfam Copine 153 365 IPR010734 -
Viun1g00874 457 MobiDBLite consensus disorder prediction 1 98 - -
Viun1g00874 457 SMART VWA_4 128 330 IPR002035 -
Viun1g00874 457 MobiDBLite consensus disorder prediction 42 74 - -
Viun1g00874 457 SUPERFAMILY RING/U-box 404 451 - -
Viun1g00874 457 SUPERFAMILY vWA-like 129 312 IPR036465 -
Viun1g00874 457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 456 IPR013083 -
Viun1g00874 457 MobiDBLite consensus disorder prediction 75 97 - -
Viun1g00874 457 Pfam Zinc finger, C3HC4 type (RING finger) 409 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00874 Viun-Chr1 11480192 11488016 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00874 K16280 - gmx:100790153 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g00874 1 11480192 11488016 Viun1g00874 1 11480192 11488016 ECH