Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00864 ATGGCTCCAATGAGTCTCCCACCTGGGTTCAGGTTCCACCCCACTGATGAAGAGCTTGTTGCTTACTACTTGGAGAGGAAAATAACAGGTCGTTCAATAGAGCTTGATATCATTGCTGAAGTTGATTTATACAAGTGTGAACCTTGGGATTTGCCAGATAAATCATTCCTTCCGAGCAAGGACATGGAGTGGTACTTTTACAGTCCTAGGGACAGGAAGTACCCAAATGGGTCAAGAACTAACCGTGCAACACAAGCTGGTTATTGGAAAGCTACAGGGAAAGATAGGCCAGTGCACTCTCAAAAGAAGCCTGTTGGTATGAAGAAGACATTGGTGTACTATAGAGGTAGAGCACCACATGGCATTAGAACCAATTGGGTTATGCATGAATATCGCTTGATTGAATCAGTGCCTGGTGCTGCTCTTTCATCTTTGAAGGATTCGTATTCGTTGTGTCGCATTTTCAAGAAGATGATTCAAATGCCTGCGAAACCTAGTAAAGAAGAACAGCAAGCCGAGGATGCAAAGAAGGAATCAATGTGGATCTCAGAAGAACAAATGTTGGGAGAAGACTCAAGTGGCACTGAGTTTTCCAGAGAAATGGAAACCGTGGAGGAAAAAATTCTCAATCACGAATACCCTAAATTTCCTTGTGACGCTTCTTCCTCTGATCTCACTCAAGGAACATGCACACCCACAGACACTGGTATAGCAGAAGATTTTCAACCACACTTTGCTTGCGATGAAGCAAACAGTGCAACTAATTCATATACAATGGGAATGGGATACCCCAGTAATCTATTTCAGGATGTGGAAATACCTTCTTTTTCTACCATGCATTACCAACTACCATACACACCTTTGGTGATGGAAGACTTCCCTCAAATTACATTGCCAGAGACAAAGTCAACGAAACCAGAAATGAACGAACCCTGCATGTTATATGACAGATACAGGGACTGCATGAATGGAACGCTAGAAGAGATAATCTCTTTGTGTTGCACTCAAGATAATAACGTCCCTTTTCCCATGCTAGAATGA 1041 0.4256 MAPMSLPPGFRFHPTDEELVAYYLERKITGRSIELDIIAEVDLYKCEPWDLPDKSFLPSKDMEWYFYSPRDRKYPNGSRTNRATQAGYWKATGKDRPVHSQKKPVGMKKTLVYYRGRAPHGIRTNWVMHEYRLIESVPGAALSSLKDSYSLCRIFKKMIQMPAKPSKEEQQAEDAKKESMWISEEQMLGEDSSGTEFSREMETVEEKILNHEYPKFPCDASSSDLTQGTCTPTDTGIAEDFQPHFACDEANSATNSYTMGMGYPSNLFQDVEIPSFSTMHYQLPYTPLVMEDFPQITLPETKSTKPEMNEPCMLYDRYRDCMNGTLEEIISLCCTQDNNVPFPMLE 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00864 346 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 214 - -
Viun1g00864 346 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Viun1g00864 346 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Viun1g00864 346 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Viun1g00864 346 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Viun1g00864 346 FunFam Nac domain-containing protein 86 15 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00864 Viun-Chr1 11308220 11312430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00864 1 335 NAC Transcription Factor Family AT1G54330 51.786 3.95e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun1g00864 NAM 1.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00864 - - gmx:100808325 665.225