Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00861 ATGGAGAGAATGTTCCCTCCCAAGAAGCCCTCAACTATGAATTCTCATGACAGACCCATGTGTGTTCAAGGAGACTCGGGTCTTGTCCTCACCACTGACCCAAAACCTCGCCTCCGTTGGACTGTTGAACTCCATGAACGTTTTGTTGATGCTGTTACTCAGCTTGGAGGCCCTGATAAGGCTACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGCAAGCAGCCCCACAAGGAATTCAATGATCACTCGATTAAGGATGCTTCGGCTTTAGAACTGCAACGAAATACTGCTTCCTCTTCTGCCATGATTGGCCGCAACATGAATGATAACTCACACATGGTTGATGCGATTAGGATGCAAATAGAGGTGCAGAGAAGATTGCACGAACAACTTGAGGTTCAGAAACACCTTCAGCTGAGGATTGAGGCTCAAGGGAAATACATGCAGAGCATATTGGAAAAAGCTTATCAAACACTTGCTGGTGAAAACATGGCTTCTGCGGCCACTAACTTAAAGGGTGGTATCGTACCTCCCCAAAGCATTCCAGACATGGGGGTGTTGAAGGACTTTGGTTCCCCTCTCGGGTTTTCTTCTTTTCAAGATCTTGAGAATATTTATGGTGGTGAACAAATTGAGCTTCAGCACAACATGGAGAAGTCAGCCCTTGATCATGGATTTATGTCAATGAACGAGAGTTTGTGTCTGGGGAAGAAGAGGACCAACCCTTACAGTGGGAGTGGGAAGAGCCCTTTGATTTGGAGTGATGATCTCAGGCTCCAAGATCTGGGAGGGCCAGCCTCATCGTGCCTTGGCCCTCAAGATGACCCTTTCAAAGGGGAGCATATTCAGATTACACCACCAGGATCATTGGATAGAGGCAGCACCGACATTGATCCCATGTCAGACATCTATGACTCAAAGCCTGTGCTTCAGGGTGAAACTGTTGTCGGGGACAAAAAGTTTGATGCATCTATGAAGCTTGAAAGGCCATCACCGAGAAGAGCTCCTCTTCAGGCTGAAAGGATGAGTCCTATGATCAGCACTGGCACAATGGCACAAGGTAGAGGCTCACCATTTGGGTGA 1137 0.4741 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDASALELQRNTASSSAMIGRNMNDNSHMVDAIRMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAATNLKGGIVPPQSIPDMGVLKDFGSPLGFSSFQDLENIYGGEQIELQHNMEKSALDHGFMSMNESLCLGKKRTNPYSGSGKSPLIWSDDLRLQDLGGPASSCLGPQDDPFKGEHIQITPPGSLDRGSTDIDPMSDIYDSKPVLQGETVVGDKKFDASMKLERPSPRRAPLQAERMSPMISTGTMAQGRGSPFG 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00861 378 Gene3D - 34 92 - -
Viun1g00861 378 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Viun1g00861 378 MobiDBLite consensus disorder prediction 1 20 - -
Viun1g00861 378 Pfam MYB-CC type transfactor, LHEQLE motif 131 176 IPR025756 -
Viun1g00861 378 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Viun1g00861 378 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Viun1g00861 378 MobiDBLite consensus disorder prediction 345 378 - -
Viun1g00861 378 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Viun1g00861 378 FunFam Myb family transcription factor 34 92 - -
Viun1g00861 378 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 191 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00861 Viun-Chr1 11190558 11192633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00861 4 378 G2-like Transcription Factor Family AT1G79430 56.010 3.52e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun1g00861 Myb_DNA-binding 2.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00861 - - gmx:100807793 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g00861 1 11190558 11192633 Viun1g00861 1 11190558 11192633 ECH