Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00860 ATGGAGAGAATGTTCCCTCCCAAGAAGCCCTCAACTATGAATTCTCATGACAGACCCATGTGTGTTCAAGGAGACTCGGGTCTTGTCCTCACCACTGACCCAAAACCTCGCCTCCGTTGGACTGTTGAACTCCATGAACGTTTTGTTGATGCTGTTACTCAGCTTGGAGGCCCTGATAAGGCTACTCCTAAAACCATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGCAAGCAGCCCCACAAGGAATTCAATGATCACTCGATTAAGGATGGTATGAGAGCTTCGGCTTTAGAACTGCAACGAAATACTGCTTCCTCTTCTGCCATGATTGGCCGCAACATGAATGAGATGCAAATAGAGGTGCAGAGAAGATTGCACGAACAACTTGAGGTTCAGAAACACCTTCAGCTGAGGATTGAGGCTCAAGGGAAATACATGCAGAGCATATTGGAAAAAGCTTATCAAACACTTGCTGGTGAAAACATGGCTTCTGCGGCCACTAACTTAAAGGGTGGTATCGTACCTCCCCAAAGCATTCCAGACATGGGGGTGTTGAAGGACTTTGGTTCCCCTCTCGGGTTTTCTTCTTTTCAAGATCTTGAGAATATTTATGGTGGTGAACAAATTGAGCTTCAGCACAACATGGAGAAGTCAGCCCTTGATCATGGATTTATGTCAATGAACGAGAGTTTGTGTCTGGGGAAGAAGAGGACCAACCCTTACAGTGGGAGTGGGAAGAGCCCTTTGATTTGGAGTGATGATCTCAGGCTCCAAGATCTGGGAGGGCCAGCCTCATCGTGCCTTGGCCCTCAAGATGACCCTTTCAAAGGGGAGCATATTCAGATTACACCACCAGGATCATTGGATAGAGGCAGCACCGACATTGATCCCATGTCAGACATCTATGACTCAAAGCCTGTGCTTCAGGGTGAAACTGTTGTCGGGGACAAAAAGTTTGATGCATCTATGAAGCTTGAAAGGCCATCACCGAGAAGAGCTCCTCTTCAGGCTGAAAGGATGAGTCCTATGATCAGCACTGGCACAATGGCACAAGGTAGAGGCTCACCATTTGGGTGA 1119 0.4754 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAMIGRNMNEMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAATNLKGGIVPPQSIPDMGVLKDFGSPLGFSSFQDLENIYGGEQIELQHNMEKSALDHGFMSMNESLCLGKKRTNPYSGSGKSPLIWSDDLRLQDLGGPASSCLGPQDDPFKGEHIQITPPGSLDRGSTDIDPMSDIYDSKPVLQGETVVGDKKFDASMKLERPSPRRAPLQAERMSPMISTGTMAQGRGSPFG 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00860 372 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Viun1g00860 372 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Viun1g00860 372 MobiDBLite consensus disorder prediction 1 20 - -
Viun1g00860 372 FunFam Myb family transcription factor 34 92 - -
Viun1g00860 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Viun1g00860 372 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 185 IPR044848 GO:0003700
Viun1g00860 372 Pfam MYB-CC type transfactor, LHEQLE motif 131 170 IPR025756 -
Viun1g00860 372 MobiDBLite consensus disorder prediction 339 372 - -
Viun1g00860 372 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Viun1g00860 372 Gene3D - 34 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00860 Viun-Chr1 11190105 11192628 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00860 4 372 G2-like Transcription Factor Family AT1G79430 58.115 1.78e-127 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun1g00860 Myb_DNA-binding 2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00860 - - gmx:100807793 681.404