Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00832 ATGGCTATCACAGGTTCTGGTTCTGGGCAGCCACAGTTCATTTCGAGCACCGGCAACCGAAGCTCTTCCAATGCGCCACTCATTGAGAACTCGGATACTAATCAAGTTGTTGTGCCTGATAGGAGAAGTTGGAAAAATTTATTTGCCTACATGGGACCTGGATTTCTTGTATCCATTGCATACATAGACCCAGGGAACTTTGAGACGGATCTTCAGGCTGGGGCACAATTTAAATATGAGTTACTTTGGATCATATTGGTGGCATCATGTGCTGCTCTTGTAATTCAATCAATGGCAGCTAATCTTGGGGTGGTCACTGGAAAACACTTAGCAGAGCATTGTAGAATTGAATATCCTCGGGTGCCCAACTTCATCCTTTGGATTATTGCTGAAATTGCTATAGTGGCCTGTGACATTCCTGAAGTAATTGGGACAGCCTTCGCACTGAACATGCTCTTCAACATACCCGTTTGGATTGGTGTTCTTCTGACAGGACTCAGCACATTGATTCTCTTAGCATTACAGCAATATGGGGTTAGGAAACTTGAATTCTTGATTGCATTTCTTGTATTTACAATTGCTGCATGTTTTATGGCTGAGCTTGGATATGCAAAGCCTGATGCTAAAGAAGTTATAAAGGGTCTTTTTGTGCCAGAACTAAAAGGAAATGGTGCAACTGGTCTCGCAATTTCCCTCCTTGGAGCTATGGTTATGCCGCACAATCTCTTCCTACACTCAGCACTGGTGCTGTCTAGGAAAATTCCACGATCCCTTCGAGGAATCAAGGAGGCTTGTAGATTTTACATGATAGAAAGTGCCTTTGCCCTCATGGTGGCCTTCCTCATAAATGTTTGTGTTATTTCTGTAAGTGGTGCTGTTTGCAATTCTTCGAATTTGAATGCAGAAGATCAAATGAGCTGTCAGAATTTGGATCTGAACGAAGCCTCCTTCCTACTTAGAAATGTCTTGGGGAAATGGAGTTCAAAACTGTTTGGAATTGCTTTGCTTGCATCGGGTCAAAGTTCTACTATAACAGGAACATATGCAGGGCAATATGTTATGCAGGGATTTCTTGATTTACGACTGGAGCCATGGATTCGGAATATGTTAACTCGTTGCTTAGCTATAGTTCCTAGTTTGATTGTTGCAGTCATTGGTGGATCAGCCGGGGCTGGGAAGCTCATAATAATTGCATCCATGATCTTATCATTTGAACTTCCTTTTGCTTTGGTTCCACTCCTCAAGTTTACAAGCTGCAAAACTAAGATGGGGACACATGTCAACTCTACCATGATTTCAGCTGTTACATGGATAATCGGTACCCTCATCATGGCCATTAACATATACTACATAATAACTGGCTTCATCAAGCTGCTTATTCACAGCCACATAAAAATTGTGGGTAAGGTGTTTCTTGGGATGATTGGATTTTCAGGCATGGCAATATATCTAGCAGGTGTAACATATCTAGTGCTACGCAAAAATACAGAGGCTACACACCTTTTGGCTCTAACAGCACCCGAAAATCAACATATGACAAATGAACATGGCAATGGACCAATCTATTCTCTTCCAAGAGAAGACATAGTAAGCATGCAATTGCCTCAAAGAAGTACTCCTGCTGCTGATCTTGACTGA 1638 0.4206 MAITGSGSGQPQFISSTGNRSSSNAPLIENSDTNQVVVPDRRSWKNLFAYMGPGFLVSIAYIDPGNFETDLQAGAQFKYELLWIILVASCAALVIQSMAANLGVVTGKHLAEHCRIEYPRVPNFILWIIAEIAIVACDIPEVIGTAFALNMLFNIPVWIGVLLTGLSTLILLALQQYGVRKLEFLIAFLVFTIAACFMAELGYAKPDAKEVIKGLFVPELKGNGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSLRGIKEACRFYMIESAFALMVAFLINVCVISVSGAVCNSSNLNAEDQMSCQNLDLNEASFLLRNVLGKWSSKLFGIALLASGQSSTITGTYAGQYVMQGFLDLRLEPWIRNMLTRCLAIVPSLIVAVIGGSAGAGKLIIIASMILSFELPFALVPLLKFTSCKTKMGTHVNSTMISAVTWIIGTLIMAINIYYIITGFIKLLIHSHIKIVGKVFLGMIGFSGMAIYLAGVTYLVLRKNTEATHLLALTAPENQHMTNEHGNGPIYSLPREDIVSMQLPQRSTPAADLD 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00832 545 NCBIfam Nramp family divalent metal transporter 52 419 - -
Viun1g00832 545 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 46 423 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun1g00832 545 MobiDBLite consensus disorder prediction 1 27 - -
Viun1g00832 545 Hamap Divalent metal cation transporter MntH [mntH]. 32 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun1g00832 545 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun1g00832 545 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun1g00832 545 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun1g00832 545 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun1g00832 545 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun1g00832 545 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun1g00832 545 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun1g00832 545 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 31 497 IPR001046 GO:0016020|GO:0030001|GO:0046873
Viun1g00832 545 Pfam Natural resistance-associated macrophage protein 67 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00832 Viun-Chr1 10434067 10438729 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00832 15 545 Inorganic Solute Cotransporters AT1G15960 78.424 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00832 K21398 - gmx:100808501 985.711