Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00827 ATGCCCCTCTCTCCCTCTTCCATGGCCTCGATCCCACACTTGTATCCAAACTACACGTTCACCACTCACGATCTTTCAGAGTTCCCTGCCCATCACATGAGTAGTGCCAACGCTTCGGTGATTGAGAACACCGTGTGGGGTGGTCAAGATACCTTCATTCCCGTGCTTGATATCAACAATGGTGCACTTGATCATATTGTGTCGCTGGATTGCGATACCATGGCTTGTGCCAACTGGGTGCCATCCTTCTCTGACCAAGTCGGGGGGCTCTCCGACTTCGCCATTTCAGACTGCAAAATGGGCTTCTATGGCGGCTTTCAGAACTTCAACGCCAGATACCAACCTCATATTGGGGACTTTGGAGAAGAATGTTGTGGCTTTGTGGAGGATGTTAAGCCACCTGCATATCCTAATGCTGCAACAGAAAACTGGGGAGTTCAAGGTAATCAAATGCAAGCGGTTGAACAGCCAAACATAAAGGTGGGAAGGTACTCAGAAGAAGAGAGGAAAGAAAGAATTCTGCGATATTTGAAGAAAAGAAATCAGAGAAACTTTAACAAAACCATCAAGTATGCATGTCGGAAAACCTTAGCTGATAGGCGAGTGAGAGTTAGGGGAAGGTTTGCAAGAAACAACGAGCTTTGTGATGAAGACATGACAACAAAAAAACACGAGAATCATCATCACCACAAAGAAGACTTCTACGGCGCTGATTCAATCCAGTTCCAGTTAAAGAATGATGAGGAAGATTGGTTGCAAGAGGCTATGGCAAGTCTAGTTTATCTATCTCACTCATCACCAGAAGATATGTAA 813 0.4539 MPLSPSSMASIPHLYPNYTFTTHDLSEFPAHHMSSANASVIENTVWGGQDTFIPVLDINNGALDHIVSLDCDTMACANWVPSFSDQVGGLSDFAISDCKMGFYGGFQNFNARYQPHIGDFGEECCGFVEDVKPPAYPNAATENWGVQGNQMQAVEQPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCDEDMTTKKHENHHHHKEDFYGADSIQFQLKNDEEDWLQEAMASLVYLSHSSPEDM 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00827 270 ProSiteProfiles CCT domain profile. 169 211 IPR010402 GO:0005515
Viun1g00827 270 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 93 226 IPR045281 GO:0009909
Viun1g00827 270 Pfam CCT motif 169 211 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00827 Viun-Chr1 10372602 10374925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00827 165 219 C2C2-CO-like Transcription Factor Family AT5G57660 47.273 1.43e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun1g00827 CCT 8.3e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00827 - - vra:106761508 513.457