Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00822 ATGGATAAATCAGAGGGAACTCCACAGCGGCAGCAGCAACAACAGCAGCAGCATGTGATGGGAGTTGCAGCAGGTGCTAACCAAATAACCTATTCTCATTACCAGACTGCTCCCGTGGTGGCTGCTGGCACACCTGCTGTAGCTGTTCCTTCCCCAACACAGGCTCCTGCTGCCTTCTCTAGCTCTGCTCACCAGCTTGCTTTCCAGCAAGCCCAACATTTCCACCATCAACAGCAGCAGCACCAACAGCAGCAGCTGCAAATGTTCTGGTCTAATCAAATGCAAGAAATCGATCAAACCATTGACTTTAAAAATCACAGTCTTCCTCTTGCTCGAATAAAAAAGATAATGAAAGCTGATGAAGATGTCCGAATGATTTCAGCAGAAGCTCCAGTCATATTTGCAAAAGCATGTGAAATGTTCATATTAGAGTTGACATTACGTTCTTGGATTCACACAGAAGAGAACAAAAGGAGAACCTTACAAAAGAATGATATAGCAGCTGCTATTTCAAGAAACGATGTATTTGATTTCTTGGTTGATATTATTCCAAGAGACGAGTTGAAAGAGGAAGGACTTGGAATAACCAAGGCCACTATTCCATTAGTGGGTTCTCCCGCTGATATGCCCTATTACTATGTCCCTCCACAGCATCCTGCTGGACCTCCTGGGATGATCATGGGAAAGCCAGTTGATCAAGCAGCACTATATTCTACACAGCAGCCTCGACCTACCATGGCTTTCATGCCATGGCCCCATACACAACCCCAGCCACAGCAACCACCCCAACAGCAACAACAACAGCAGCAGCAAACAGATTCATGA 825 0.4582 MDKSEGTPQRQQQQQQQHVMGVAAGANQITYSHYQTAPVVAAGTPAVAVPSPTQAPAAFSSSAHQLAFQQAQHFHHQQQQHQQQQLQMFWSNQMQEIDQTIDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRNDVFDFLVDIIPRDELKEEGLGITKATIPLVGSPADMPYYYVPPQHPAGPPGMIMGKPVDQAALYSTQQPRPTMAFMPWPHTQPQPQQPPQQQQQQQQQTDS 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00822 274 MobiDBLite consensus disorder prediction 1 21 - -
Viun1g00822 274 Gene3D Histone, subunit A 68 185 IPR009072 GO:0046982
Viun1g00822 274 MobiDBLite consensus disorder prediction 7 21 - -
Viun1g00822 274 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 61 270 - -
Viun1g00822 274 SUPERFAMILY Histone-fold 66 179 IPR009072 GO:0046982
Viun1g00822 274 MobiDBLite consensus disorder prediction 260 274 - -
Viun1g00822 274 Pfam Core histone H2A/H2B/H3/H4 71 170 IPR007125 GO:0003677
Viun1g00822 274 FunFam Nuclear transcription factor Y subunit gamma 72 185 - -
Viun1g00822 274 MobiDBLite consensus disorder prediction 239 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00822 Viun-Chr1 10287672 10290515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00822 86 214 CCAAT-HAP5 Transcription Factor Family AT1G56170 88.462 2.91e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Viun1g00822 CBFD_NFYB_HMF 2.4e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00822 K08066 - gmx:100796987 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g00822 1 10287672 10290515 Viun1g00822 1 10287672 10290515 ECH