Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00817 ATGCAGAAACATCAATACAATTCCATGGAATCTAGAACTGAGGAATTCCATTCTGCGCCGCAATTGGTCCCTCAAGACCTTCGTGATGGCATGCATATCAATGCACGGCCTCCAGCATATAATATGTCAGAAAATAAACCTGTACTTAACTATTCCATACAGACAGGTGAGGAGTTTGCTCTCGAGTTTATGAGAGATAGGGTGAATCTCAGGAAGCCTCCCTTTCCAAATGTTGTAGGTGATCCCAACTATTCAACAGGCTATATGGAATTGAAAGGCATTTTGGGACATACAGGATCTGAGAGTGGATCTGATATATCTGTGCTCACAAAGACTGACAAGGGTCCTAAAGAGTTTGACAGAAGGAACTCTTCTCAACACCAGGACAGAAGTAATTATGGTTCAGCTCGATCAATTCCTAGAACATCATCCAATCAAGAAAATTACCGAGTCCTTCATGGTACTGCCTCTTCCAGTGCATCTGAAATTTCATCCATGAAGATGAAGGTTCTGTGCAGCTTTGGGGGAAGAATATTGCCAAGGCCCAGTGATGGAAAGCTTAGATATGTTGGGGGTGAAACGCGTATTATAAGTATAAGAAGAGACATACGTTTGCAGGAGCTTATGCACAAAACATCATTAATTTATGGTGAACCTCATGTGATAAAGTATCAGCTCCCTGGAGAAGATCTTGATGCGTTAGTTTCAGTATCTTCTGATGAGGATCTGCGGAACATGATGGAGGAATGTCATGATTTACAAGGTGAACGAGGATCAACCAAGCTTAGGATGTTTCTGTTCTCTATAAATGATTTGGATGATACTCAGTTTGGCATAGGTAGCATTGACGGTGACTCTGAAATCCAGTATGTAGTTGCTGTTAATGGCATGAGCATGAGTTCAAGAAACAACTCAATTCTTCATGCCGCAGGTGGCTCTACCAATAACTTGCATGAATTGAATGAACAAAATAATGATAGGGAGACCAACAGAGTTTTGATGGACTCATTTGGTGTTAGTGGCTCATCTTTGACTGACAATGTTAAATCATCATTGACTATTCAATCTTCACAACAAATGCTTCCAATCTCCTCTAATGCTTTTGAAACCCATCCATTGTTTTATGATGACCCGGTTATTCACCAAGGGGATGCTAGTCAATATCCACTACAGCACGGTATTGGTCCTTCTAACAACTCCGCTCGCAATGTTGGAGAGATTCCAGTTTCTGTGCCTATTCAAAGTCTTGTTAACCAAGGGATCGTGAATGATGGACAAACATCCAGCGAGTTGCAGGTACAAATTTCAGCCATGCCAGACACGTTGGTAAAAAGAAAGGGTGATAATTTCATTCATACAGGCAATGATCCAGGAAAAGTTTTCCCCTTGGAAGCACCATATCCTATTGCTTCGCTGCCATTTGGGGGAAATTTGCATGCTAATTTACCAGAGGCACCAGTTAGTGCTGCTATATCAGAAGGGTTTCATCATGCAGTGCCATCAAAGAACAAGGGTAAGCACCAGCAGTCTGAAGATGCCTATTCATTGATCGGGAGTATGAATCCCACACAGACTCCTAAGTCTGGTGAAGATGATTTATATACTACACCCACTGATGCATTCAGCCGTGCTCAGGTTGATGCTGAGTCCAATGTGATTGATTTCGGTAGCCTTGAACCACCTCCACTTCCCAACAGAGTCTACTATTCAGAGAGAATTCCAAGGGAGCAGGAAGATTTGCTGAATCGATCTACTAAGTCAGATGACGCTTATGGTTCTCACTTACTTATGTCCGATTTGCTTTCTGACTTCAGCCAGAAGAATTCAGAAACAGAATCCAATGACATATTGCACGGTGGGAATATGTCAAATCAGAACATTATGTCCAGATCAGCACCAAAGCCTTTGCAAGCAGATGGCAATACCATTGATGATGGATTTGCCCCACCGCCAACATACAAACAGTGGCCTGATACAACAAATAAGTTGAATTCAAAGTTAGCACTGCATGTGAATTCTGAGTTGAAGCAAGTGTTGGTAGATAATAAGGTTACTGGAATTGAGGACCAGGTCCTCCATTCTGAAAATGATACCAATCGTTCCAAAGACAACCATAACATCCTCTTAGTTGATGGACCCAAAGGTACTGGACATCTGGCACTTCATCAGGTTCTTCCAGTTGAACATAATCTGAATGTAGTGTCTAAACCTCCAGACCTCAATTTGGCTGAAGTTTCTACCAGGGAATCGAATAACGGTACTAAGGTCCAAGCTGTGGCTTTTCCTTCAACTGGAAACACAGGCCAAGATGTTTCTCAAAATTTTCCCCCAGAAGTTAGGACAAGACCTACTACTCAGGGAGACATTCTTATTGATATTGAGGACAGGTTTCCCCGTGATATCCTTCATGATATGTTCTCCAAAGCAATACTTTCCGAAGATTCCTCAAGTATTGGTCCGTTAGCAGCAGATAGAGCAGTGAGGAAAGTTCCAGATGGGGATAGTAAATCTCAGCATTCTGCTGCACTACTGGCAGATGGTGCTTTGGCAGGACACAAGGAATCTCACCTAAATTTCGGTGGTGACGAAAATCAGAAAAATGTTCCTGTAACAACTAAAACAGAATCAACTCTCCTTCAACAAAAATATGAGCATTCCCAGCTAAAGGGCAATGAAAATAAGAATATGGAAGCCATAATGGAAAACGTAAGACCACAGGAATCTGAATACCTGGAGGATGACCAGAATGAAGCAAGGAATGTTGATTTGGCAGGGAATTTTGACATCAGTACTGTGCAGTTCATAAAGAATGATGATCTTGAAGAGCTTCGAGAGCTGGGTTCTGGTACCTTTGGGACTGTGTACCATGGAAAGTGGAGGGGATCGGATGTTGCTATTAAAAGAATAAAGAAAAGCTGCTTCGCTGGTCGATCTTCAGAACAAGAGAGACTGACCATAGAGTTCTGGCGTGAAGCTGACATACTTTCCAAGCTTCACCATCCAAATGTTGTAGCATTTTATGGTGTAGTTCAGGATGGACCAGGAGCAACATTGGCAACTGTCACTGAGTACATGGTGGATGGTTCTCTCAGGAATGTTTTGCTTCGTAAGGATAGATATCTTGATCGCCGTAAGAGGTTGATAATAGCCATGGATGCAGCTTTTGGAATGGAATATTTACACTCAAAAAATATTGTGCATTTTGACTTGAAATGTGACAATTTGCTTGTGAACTTGAAGGATCCTTTACGGCCAATATGCAAGGTTGGTGATTTTGGCCTATCAAAAATTAAGCGAAACACCCTTGTTTCTGGTGGTGTTCGTGGAACTCTACCTTGGATGGCACCAGAGCTGCTAAACGGTAGCAGCAACAAGGTCTCAGAAAAGGTTGATGTGTTTTCTTTCGGCATAGTCTTATGGGAGATTCTTACTGGTGAAGAACCATATGCTAATATGCACTATGGTGCAATTATTGGAGGTATTGTGAATAACACATTGAGACCTACAATCCCCAGTTACTGTGATCTTGAGTGGAAAACACTGATGGAGCAGTGTTGGGCACCCAATCCTGCAGTTAGGCCATCCTTCACAGAAATTGCTCGGCGTCTGCGTGTGATGTCTGCAGCTGCTATTCAGAACAAAGGACAGGTCCACAAGGCTTCTAAATGA 3669 0.423 MQKHQYNSMESRTEEFHSAPQLVPQDLRDGMHINARPPAYNMSENKPVLNYSIQTGEEFALEFMRDRVNLRKPPFPNVVGDPNYSTGYMELKGILGHTGSESGSDISVLTKTDKGPKEFDRRNSSQHQDRSNYGSARSIPRTSSNQENYRVLHGTASSSASEISSMKMKVLCSFGGRILPRPSDGKLRYVGGETRIISIRRDIRLQELMHKTSLIYGEPHVIKYQLPGEDLDALVSVSSDEDLRNMMEECHDLQGERGSTKLRMFLFSINDLDDTQFGIGSIDGDSEIQYVVAVNGMSMSSRNNSILHAAGGSTNNLHELNEQNNDRETNRVLMDSFGVSGSSLTDNVKSSLTIQSSQQMLPISSNAFETHPLFYDDPVIHQGDASQYPLQHGIGPSNNSARNVGEIPVSVPIQSLVNQGIVNDGQTSSELQVQISAMPDTLVKRKGDNFIHTGNDPGKVFPLEAPYPIASLPFGGNLHANLPEAPVSAAISEGFHHAVPSKNKGKHQQSEDAYSLIGSMNPTQTPKSGEDDLYTTPTDAFSRAQVDAESNVIDFGSLEPPPLPNRVYYSERIPREQEDLLNRSTKSDDAYGSHLLMSDLLSDFSQKNSETESNDILHGGNMSNQNIMSRSAPKPLQADGNTIDDGFAPPPTYKQWPDTTNKLNSKLALHVNSELKQVLVDNKVTGIEDQVLHSENDTNRSKDNHNILLVDGPKGTGHLALHQVLPVEHNLNVVSKPPDLNLAEVSTRESNNGTKVQAVAFPSTGNTGQDVSQNFPPEVRTRPTTQGDILIDIEDRFPRDILHDMFSKAILSEDSSSIGPLAADRAVRKVPDGDSKSQHSAALLADGALAGHKESHLNFGGDENQKNVPVTTKTESTLLQQKYEHSQLKGNENKNMEAIMENVRPQESEYLEDDQNEARNVDLAGNFDISTVQFIKNDDLEELRELGSGTFGTVYHGKWRGSDVAIKRIKKSCFAGRSSEQERLTIEFWREADILSKLHHPNVVAFYGVVQDGPGATLATVTEYMVDGSLRNVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSYCDLEWKTLMEQCWAPNPAVRPSFTEIARRLRVMSAAAIQNKGQVHKASK 1222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00817 1222 MobiDBLite consensus disorder prediction 1 15 - -
Viun1g00817 1222 MobiDBLite consensus disorder prediction 128 148 - -
Viun1g00817 1222 Gene3D - 186 269 - -
Viun1g00817 1222 ProSiteProfiles Protein kinase domain profile. 940 1205 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00817 1222 CDD STKc_MAP3K-like 946 1203 - -
Viun1g00817 1222 CDD PB1_UP2 171 267 - -
Viun1g00817 1222 Pfam PB1 domain 184 267 IPR000270 GO:0005515
Viun1g00817 1222 Gene3D Transferase(Phosphotransferase) domain 1 1027 1222 - -
Viun1g00817 1222 MobiDBLite consensus disorder prediction 100 148 - -
Viun1g00817 1222 SUPERFAMILY CAD & PB1 domains 183 275 - -
Viun1g00817 1222 Gene3D Phosphorylase Kinase; domain 1 927 1026 - -
Viun1g00817 1222 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 933 1027 - -
Viun1g00817 1222 MobiDBLite consensus disorder prediction 762 783 - -
Viun1g00817 1222 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1065 1077 IPR008271 GO:0004672|GO:0006468
Viun1g00817 1222 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 187 269 - -
Viun1g00817 1222 PANTHER SERINE-THREONINE PROTEIN KINASE 212 1204 - -
Viun1g00817 1222 MobiDBLite consensus disorder prediction 609 650 - -
Viun1g00817 1222 MobiDBLite consensus disorder prediction 609 636 - -
Viun1g00817 1222 MobiDBLite consensus disorder prediction 111 127 - -
Viun1g00817 1222 SMART serkin_6 940 1206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00817 1222 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1028 1220 - -
Viun1g00817 1222 MobiDBLite consensus disorder prediction 762 781 - -
Viun1g00817 1222 MobiDBLite consensus disorder prediction 1 24 - -
Viun1g00817 1222 SUPERFAMILY Protein kinase-like (PK-like) 931 1202 IPR011009 -
Viun1g00817 1222 ProSitePatterns Protein kinases ATP-binding region signature. 946 971 IPR017441 GO:0005524
Viun1g00817 1222 SMART PB1_new 182 269 IPR000270 GO:0005515
Viun1g00817 1222 Pfam Protein tyrosine and serine/threonine kinase 941 1203 IPR001245 GO:0004672|GO:0006468
Viun1g00817 1222 PRINTS Tyrosine kinase catalytic domain signature 1174 1196 IPR001245 GO:0004672|GO:0006468
Viun1g00817 1222 PRINTS Tyrosine kinase catalytic domain signature 1130 1152 IPR001245 GO:0004672|GO:0006468
Viun1g00817 1222 PRINTS Tyrosine kinase catalytic domain signature 1059 1077 IPR001245 GO:0004672|GO:0006468
Viun1g00817 1222 PRINTS Tyrosine kinase catalytic domain signature 1022 1035 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00817 Viun-Chr1 10229182 10238402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00817 18 618 MAP Kinase Kinase Kinase AT1G16270 37.672 1.38e-94 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Viun1g00817 PK_Tyr_Ser-Thr 5.2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00817 - - var:108333936 2308.87