Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00798 ATGGCTGCGGTTGCTGAGATTCCCGCTGATGCCAACAAAATGGATTCAAAACCTAAGGCTGAATCTGAATTCAGTGTCCAGAAGCTGGTTGACATGTTCACAAAGTTGAATCCTTTGGCCAAGGAGTTTTTCCCTTCATCATATCCTCCTAATCATGATCATCGCCTTCAGGGCTTTAATCAGCTCTCACCAACCCACTTTCTGGTCAACTCTAAGACTTCTGCTAATGAGAATTTCGCAAACAATCGAAGGAGAAGAAATAGTTTTAACCAAGGAAGAAGGAGGGTGAGTGGAAGATCACTAAAGGCTCAGAGAGAAGATAGCATTAGAAGAACAGTATATGTTTCTGATATTGATCAGCATGTTACTGAAGAGAGGCTTGCAGCATTATTCAGCAGTTGTGGACAAGTAATTGATTGCCGAATTTGCGGTGACCCACATTCAGTTCTTCGTTTTGCTTTTGTTGAGTTTGCAGATGAGTATGGTGCTAGAACAGCTTTAAACCTTGGTGGTACTGTACTTGGATACTATCCAGTGAGGGTTCTTCCTTCAAAAACTGCCATTCTTCCTGTGAATCCTACATTCCTCCCTAGGTCGGATGATGAGCGCGAAATGTGTGCCCGAACTGTCTATTGTACAAATATTGATAAGAAGATTTCTCAAGCTGAAGTGAAGAATTTTTTTGAATCAGCTTGTGGTGAGGTTACGCGCCTGAGGCTTTTGGGGGACCATGTGCATTCCACTCGAATTGCTTTTGTGGAATTTGCAATGGCTGAAAGTGCCATTATTGCACTAAACTGTAGTGGGATGCTCTTGGGATCTCAGCCTATAAGGGTAAGTCCATCAAAGACTCCGGTGAGGCCAAGGGTCACTCGTCCGGCATCCCATTAA 891 0.4355 MAAVAEIPADANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYPPNHDHRLQGFNQLSPTHFLVNSKTSANENFANNRRRRNSFNQGRRRVSGRSLKAQREDSIRRTVYVSDIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTVYCTNIDKKISQAEVKNFFESACGEVTRLRLLGDHVHSTRIAFVEFAMAESAIIALNCSGMLLGSQPIRVSPSKTPVRPRVTRPASH 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00798 296 CDD RRM1_CID8_like 109 188 IPR034823 -
Viun1g00798 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 186 IPR000504 GO:0003723
Viun1g00798 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 284 IPR000504 GO:0003723
Viun1g00798 296 Pfam Ataxin-2 C-terminal region 32 47 IPR009818 -
Viun1g00798 296 SMART rrm1_1 209 280 IPR000504 GO:0003723
Viun1g00798 296 SMART rrm1_1 112 182 IPR000504 GO:0003723
Viun1g00798 296 MobiDBLite consensus disorder prediction 1 20 - -
Viun1g00798 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Viun1g00798 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Viun1g00798 296 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 32 290 - -
Viun1g00798 296 SUPERFAMILY RNA-binding domain, RBD 199 290 IPR035979 GO:0003676
Viun1g00798 296 SUPERFAMILY RNA-binding domain, RBD 79 187 IPR035979 GO:0003676
Viun1g00798 296 Gene3D - 69 187 IPR012677 -
Viun1g00798 296 Gene3D - 196 290 IPR012677 -
Viun1g00798 296 FunFam Polyadenylate-binding protein-interacting protein 10 202 280 - -
Viun1g00798 296 CDD RRM2_CID8_like 204 285 IPR034825 -
Viun1g00798 296 FunFam Polyadenylate-binding protein-interacting protein 11 75 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00798 Viun-Chr1 9350427 9357251 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00798 108 280 Eukaryotic Initiation Factors Gene Family AT1G34140 25.989 2.22e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00798 - - gmx:100818291 548.125