Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00750 ATGCCAGCTTTGATTTCATCTAGGTTTCTTCTGCTTGTTGGGGAGTCACTCCACTTGAGAAGGGCTCTGGCCACTTCTAGGTCTGTTTTATTGCACACTAGTGTGACGTGTATGAGCCAGGTGGAACCTAATCATGGTTCCCTCACCCTCTCTAGCATAGGTTTCCAAACTGAAACGAAAGCTGAGAACAGAAGCAAGTCTAATAAGGTTAAGCCATTTGGTTCACCCTCTGAGAATCTCAAGAGCAAAGGAAAGCCCTTTGACATTAATGAGAAGAAGAAGAAAGCCATTAGGGTTGTAGAAAAACAGCAAATAGAGTTTGCCCCTTTTGCTGCAAAGTCATTTTCAGAACTTGGGCTCCCACATGTGTTGATTGAGAGGTTAGAGAAGGAGGGTTTTACTGTTCCGACCGAAGTTCAGTCTGCTGCAGTTCCCACCATTCTGAACAACCATGATGTCATAATTCAGTCTTACACTGGTTCAGGGAAGACACTAGCTTACCTGCTTCCTCTTCTCTCGGTTGTTGGACCGCTGAGGGGGAAAGGTGATGATGGTGGTGATGAGAATGGGAAGAAGTTGGGAATTGAAGCAGTGATTGTTGCTCCTTCTAGAGAGCTTGGAATGCAGATAGTGAGGGAGTTTGAGAAGGTGCTAGGAATGGATAACAAGAGAGTGGTTCAGCAGCTTGTGGGGGGTGCCAACCGAACCAGGCAGGAAGATGCTCTCAAGAAAAACAAACCTGCAATTGTTGTCGGCACACCTGGTAGGATAGCAGAGCTAAGTGCATCTGGGAAACTTCGCACTCATGGATGTCGATATTTGGTGTTGGATGAAGTTGATGAACTCTTGTCCTTCAATTTCCGGGAAGATATGCACCGGATATTGGAGCATGTAGGGAGGAGATCAAGTGCAGACCCAAGCTCAAATTCTGCAAAGAATGAGCGTCAGTTGATCATGGTTTCTGCAACTGTGCCCTTTTCTGTTGTGAGGGCTGCTAGAAGCTGGGGTTGTGACCCTCTTCTAGTCCAAGCTAAGAAAATTGTCCCACTTGAAACTTTCTCTCCCTCTGAGCCTGTCAGTTTATCCCGGTCTTCTTTGCCGAGCTCAGCTATGCCGTCTCAAGCAGCAGTAGAGAGTCTGCCACCTGCGCTGAAACACTATTACTGTGTGACAAGGTTGCAGCACAAAGTTGATGTGTTGAGAAGGTGTATTCATGCACTGGATGCCAAATTTGTGATAGCTTTCATGAACCACACTAAACAGCTAAAGGATGTTGTCTTCAAGCTGGAGGCCCGTGGGATGACAGCTGTGGAGTTACATGGGGATCTAGGGAAGCTTGCAAGGTCAACAACCCTGAAGAAATTCAAGAACGGTGAGGTGAGAGTTCTGGTAACGAATGAATTGTCTGCAAGGGGGTTGGATGTGGCAGAATGTGATCTTGTGGTTAATCTTGACTTGCCAACAGATTCAATTCATTATGCACATCGGGCTGGCCGAACTGGTCGGCTTGGTAGGAATGGTACAGTGCTAACCATATGTGAAGAACCAGAAGTGTTTGTTGTGAGGAAATTGCAGAAGCAGCTGGGAATTCCAATTGCGTCCTGTGATTTTTCAGAGGGGAAACTACTTGTCACTGAAGAAGAGAAAACAGTAAGCACTTCTACAAGTTGA 1671 0.4626 MPALISSRFLLLVGESLHLRRALATSRSVLLHTSVTCMSQVEPNHGSLTLSSIGFQTETKAENRSKSNKVKPFGSPSENLKSKGKPFDINEKKKKAIRVVEKQQIEFAPFAAKSFSELGLPHVLIERLEKEGFTVPTEVQSAAVPTILNNHDVIIQSYTGSGKTLAYLLPLLSVVGPLRGKGDDGGDENGKKLGIEAVIVAPSRELGMQIVREFEKVLGMDNKRVVQQLVGGANRTRQEDALKKNKPAIVVGTPGRIAELSASGKLRTHGCRYLVLDEVDELLSFNFREDMHRILEHVGRRSSADPSSNSAKNERQLIMVSATVPFSVVRAARSWGCDPLLVQAKKIVPLETFSPSEPVSLSRSSLPSSAMPSQAAVESLPPALKHYYCVTRLQHKVDVLRRCIHALDAKFVIAFMNHTKQLKDVVFKLEARGMTAVELHGDLGKLARSTTLKKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAGRTGRLGRNGTVLTICEEPEVFVVRKLQKQLGIPIASCDFSEGKLLVTEEEKTVSTSTS 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00750 556 Gene3D - 381 544 IPR027417 -
Viun1g00750 556 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 29 542 - -
Viun1g00750 556 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 342 IPR014001 -
Viun1g00750 556 MobiDBLite consensus disorder prediction 59 86 - -
Viun1g00750 556 CDD SF2_C_DEAD 384 513 - -
Viun1g00750 556 SMART ultradead3 132 362 IPR014001 -
Viun1g00750 556 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 113 141 IPR014014 GO:0003724
Viun1g00750 556 Pfam Helicase conserved C-terminal domain 401 504 IPR001650 -
Viun1g00750 556 SMART helicmild6 423 504 IPR001650 -
Viun1g00750 556 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 399 543 IPR001650 -
Viun1g00750 556 CDD DEADc 124 343 - -
Viun1g00750 556 Gene3D - 78 344 IPR027417 -
Viun1g00750 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 524 IPR027417 -
Viun1g00750 556 Pfam DEAD/DEAH box helicase 137 328 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00750 Viun-Chr1 7776358 7778626 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00750 114 532 Eukaryotic Initiation Factors Gene Family AT3G19760 25.000 1.07e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00750 - - gmx:100812968 929.087