Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00728 ATGCCTGATTTACCACCTGAGATGAGACACAATATGTCAGAAGAGGCACACCCTAGTGTTCATAGCAGTTGTGCAAAGTCAGGAAACAACTCACCAACTCATCCCAATAGTGTGAACCAAGCAGAAAATGTCTACACTTCAGGAAGGGAAACTGGACAATTGGACCATGTTTCAAAATCTGATAATGCAAAGTTGGAAGGTAAATCAAGGCCCCAGAGGCTAATTCCACCAAACAGGAACATCTCTGACTTCAACCCTCAACAACACCAAAGTCCAAGCACAGTAAAGAAGCCTGGTCAAACCCCTGATCACCATCATTCAAAGACAGTGTCTGTGTCAACCCCACATGGAAAGACCTCGAATCATGCGAGCACTGGTTCTCGCAGTAACAGCTTAGAGAGCACAAGTGCACCCATTAGGCCACATACTGGGGGTGATGTGAGGTGGGAAGCAATCAACATGGTTTCAAAGTGTGGCCCTCTCAATCTCAGCCACTTCAGGCTTCTCAAGCGCATTGGTTATGGAGACATTGGGAGTGTGTACCTTGTGGATCTCAAAGGGACCAAGACCTACTTTGCCATGAAAGTAATGGACAAGGCAGCACTCATAAGCAGAAATAAGCTTCTGAGGGCACAGACAGAAAGGGAGATTCTTGGACTCCTTGACCACCCCTTTCTCCCAACTTTGTATTCTTACTTTGAAACTGAGAAGTTTTACTGTCTGGTGATGGAGTTTTGTAGTGGAGGTGATCTTCATACTCTTCGACAGAAGCAACCTAACAAGTGCTTCACTGAAGAAGCTGCCAGGTTTTATGCCTCAGAGGTTTTGCTAGCTCTGGAGTACCTGCACATGCTTGGCATTGTATACAGAGACTTAAAACCAGAAAATCTTCTAGTGAGAGATGAAGGGCACATCATGCTCTCAGATTTTGACTTATCCCTTCGCTGCTCCGTGAGTCCTACACTAGTCAAATCTTCATCTGCACATGCAAGCAACAATAATGGTGGCAACAGTGACTCCAGTGGCGTACTAAGTGATGACCAAGCAAGCACTACTCAAGTATCTAGTTTTTTTCCGCGCATTTTACCTTCAAAGAAGAACCGCAAGGCAAAGTCAGATTTTGGCCTATTAGTTGGCGGAGCACGCCTTCCTGAACTGATGGCAGAGCCTACCAATGTGAGATCAATGTCATTTGTAGGAACACATGAGTATCTTGCTCCTGAGATTATCAAAGGAGAGGGTCATGGTAGTGCAGTAGATTGGTGGACTTTTGGGATCTTTTTGTATGAGCTGTTGCATGGATCAACCCCTTTCAAGGGTGCAGGGTATAAAGCCACACTTTTTAATGTTGTTGGACAACCACTTAGGTTCCCAGAAACTCCCCAGGTCAGTTCAGTGGCTCGTGACCTTATTAGGGGATTGCTTGTGAAAGAGCCGCAGAAGAGAATTGCATATAAAAGAGGAGCTACAGAGATAAAACAGCACCCATTTTTTGAGGGAATGAACTGGGCTCTAGTCAGAAGTGCCACACCTCCCCACATACCAGATACTATAGACTTCTCCAAATATGCCACCAAAGACGCAACACCCCCGGTGGACAAGAAGATGGCAGATATTGCTAATGATAAACACAGCCATAATGCTAGTGATTCTTACGTAGATTTTGAGTACTTTTAG 1677 0.4508 MPDLPPEMRHNMSEEAHPSVHSSCAKSGNNSPTHPNSVNQAENVYTSGRETGQLDHVSKSDNAKLEGKSRPQRLIPPNRNISDFNPQQHQSPSTVKKPGQTPDHHHSKTVSVSTPHGKTSNHASTGSRSNSLESTSAPIRPHTGGDVRWEAINMVSKCGPLNLSHFRLLKRIGYGDIGSVYLVDLKGTKTYFAMKVMDKAALISRNKLLRAQTEREILGLLDHPFLPTLYSYFETEKFYCLVMEFCSGGDLHTLRQKQPNKCFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVSPTLVKSSSAHASNNNGGNSDSSGVLSDDQASTTQVSSFFPRILPSKKNRKAKSDFGLLVGGARLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGSTPFKGAGYKATLFNVVGQPLRFPETPQVSSVARDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGMNWALVRSATPPHIPDTIDFSKYATKDATPPVDKKMADIANDKHSHNASDSYVDFEYF 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00728 558 MobiDBLite consensus disorder prediction 1 143 - -
Viun1g00728 558 FunFam Serine/threonine-protein kinase AGC1-7 391 516 - -
Viun1g00728 558 MobiDBLite consensus disorder prediction 105 138 - -
Viun1g00728 558 PANTHER FLIPPASE KINASE 1-RELATED 33 524 - -
Viun1g00728 558 FunFam Serine/threonine-protein kinase D6PK-like 164 249 - -
Viun1g00728 558 SUPERFAMILY Protein kinase-like (PK-like) 163 523 IPR011009 -
Viun1g00728 558 CDD STKc_phototropin_like 164 519 - -
Viun1g00728 558 Pfam Protein kinase domain 389 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00728 558 Pfam Protein kinase domain 167 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00728 558 MobiDBLite consensus disorder prediction 54 68 - -
Viun1g00728 558 FunFam serine/threonine-protein kinase D6PK-like 250 317 - -
Viun1g00728 558 SMART serkin_6 166 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00728 558 MobiDBLite consensus disorder prediction 75 98 - -
Viun1g00728 558 MobiDBLite consensus disorder prediction 17 53 - -
Viun1g00728 558 Gene3D Transferase(Phosphotransferase) domain 1 250 320 - -
Viun1g00728 558 ProSiteProfiles Protein kinase domain profile. 166 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00728 558 MobiDBLite consensus disorder prediction 326 346 - -
Viun1g00728 558 Gene3D Phosphorylase Kinase; domain 1 164 249 - -
Viun1g00728 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672|GO:0006468
Viun1g00728 558 Gene3D Transferase(Phosphotransferase) domain 1 392 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00728 Viun-Chr1 7225666 7229383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00728 132 558 AGC Kinase Gene Family AT1G79250 72.483 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Viun1g00728 Pkinase 3.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00728 - - gmx:100784301 939.488