Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00724 ATGGCCGCTGCCGACTCCTCCGCCGCCGCTCCTTTGCGCCAGCTATCGCAGAAAGAGACGGACATCCAGATGATGCTCGCCGCCGACGTTCACCTCGGCACCAAAAACTGTGACTTTCAAATGGAGCGCTACGTCTTCAAGCGCCGCACTGACGGTATATACATAATCAACCTTGGAAAAACATGGGAGAAGCTCCTTCTTGCTGCTAGGATTATTGTTGCCATCGAGAACCCACAGGATATCATTGTTCAGTCCGCCAGGCCTTATGGTCAGAGGGCAGTGCTTAAGTTTGCTCAGTACACCGGGGCTCATGCAATTGCAGGAAGGCACACTCCTGGAACATTCACCAATCAGATGCAGACATCCTACAATGAGCCTCGTCTTCTAATTCTTACTGATCCAAGAACCGATCATCAGCCTATTAAGGAGGGTGCTCTTGGCAATATTCCCACTATTGCCTTTTGTGACACTGATTCTCCAATGCGGTATGTTGACGTTGGGATTCCGGCCAATAATAAGGGGAAGCATAGCATTGGTTGTCTCTTTTGGCTTTTAGCTCGTATGGTGCTGCAGATGCGGGGCACTATTCGTCCGGGTCACAAGTGGGATGTGATGGTGGATTTATTCTTCTATAGAGAACCTGAAGAAGCTAAGCAACAAGAGGAAGATGAAGCACCACCTGCGCAAGATTTTGCCATCGATTTCAATGGTGCTGCCATTAGCAGCTTCCCTGCAGACAGACAATGGCCTCCTGCACTCGACCAACCCTGGACAGATGACGCTCCACAACCAATTCCAGCAGTTCCTACTAACTGGACCCCAGAAACAGCTGCTGCAGGAGATTGGGGTGAGGCTGTTCCTGCACCGGTCCCCGCTGCCGTACCGGCTCCACAAGTTGGTGTGCCTCCAGCTCAAAATCTTCCTGCTACTGGCTGGGACTAG 942 0.5149 MAAADSSAAAPLRQLSQKETDIQMMLAADVHLGTKNCDFQMERYVFKRRTDGIYIINLGKTWEKLLLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEEAKQQEEDEAPPAQDFAIDFNGAAISSFPADRQWPPALDQPWTDDAPQPIPAVPTNWTPETAAAGDWGEAVPAPVPAAVPAPQVGVPPAQNLPATGWD 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00724 313 PRINTS Ribosomal protein S2 signature 22 40 IPR001865 GO:0003735|GO:0005840|GO:0006412
Viun1g00724 313 PRINTS Ribosomal protein S2 signature 126 143 IPR001865 GO:0003735|GO:0005840|GO:0006412
Viun1g00724 313 PRINTS Ribosomal protein S2 signature 143 154 IPR001865 GO:0003735|GO:0005840|GO:0006412
Viun1g00724 313 PRINTS Ribosomal protein S2 signature 101 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Viun1g00724 313 PRINTS Ribosomal protein S2 signature 164 178 IPR001865 GO:0003735|GO:0005840|GO:0006412
Viun1g00724 313 PRINTS Ribosomal protein S2 signature 52 61 IPR001865 GO:0003735|GO:0005840|GO:0006412
Viun1g00724 313 PANTHER 40S RIBOSOMAL PROTEIN SA 13 292 IPR005707 GO:0003735|GO:0006412|GO:0015935
Viun1g00724 313 MobiDBLite consensus disorder prediction 244 313 - -
Viun1g00724 313 ProSitePatterns Ribosomal protein S2 signature 2. 126 150 IPR018130 GO:0003735|GO:0005840|GO:0006412
Viun1g00724 313 Pfam Ribosomal protein S2 25 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Viun1g00724 313 Gene3D - 21 226 - -
Viun1g00724 313 SUPERFAMILY Ribosomal protein S2 17 207 IPR023591 -
Viun1g00724 313 FunFam 40S ribosomal protein SA 21 227 - -
Viun1g00724 313 CDD RPS2 25 191 IPR001865 GO:0003735|GO:0005840|GO:0006412
Viun1g00724 313 Hamap 40S ribosomal protein SA [rps-0]. 9 285 IPR027498 GO:0003735|GO:0006412|GO:0015935
Viun1g00724 313 NCBIfam 30S ribosomal protein S2 18 213 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00724 Viun-Chr1 7198524 7201648 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00724 4 288 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 71.777 1.43e-148 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00724 K02998 - gmx:100786575 541.191