Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00713 ATGTATTCAATGGCAATGGAATCATCAAAAGGGTACTCACACTATACAAAGGAGGATCTACACATCATGAAAAGCAAAAGCAAGAAGAACAACACACCAAGAGAAATTGAAATGGAAGGCAAAGGTTTAGGAGAAGTGAGAAGGCTTCACATCATTTACTTCCTCAGTCAGATAGGTGGTCGTGCAGATCATCCTCATCTAATTCGTGTTCTTCATCTTACTCGTAATGGGGTTTATCTCAGAGATGTCAAGAGATGGCTTGGGGAATTGAGAGGGAAAGACTTGCCTGAGGCATTTTCTTGGTCCTACAAGAGAAGGTACAAGAGTGGATATGTGTGGCAAGACTTGCTGGATGACGACCTCATAACCCCCATCTCTGACAATGAATACATCCTCAAAGGATCACAAATCCACACTACCCCATTTGCAACAACTCCTTCACTAGAAGAAAAGAAAGCTGCAGTTTGTGATATCAATGCTGAAAAGATGTGTCCTCAGTTACAAGTTGTAGAGGACAAAGAACACCAGCATCAGCAGCAGCGGAAGCCGCCACAGTCTCTAGCAGAAGAAGAATCTCAGGTTCAAACAGACCAGAATTCGAAAACAAATTCTCCAACAAAAGGGTCATCAGAAATCAGTCAGGACTCGTTGGTCTTCAGCTCAGACAGGTCGTCTGTGACAGATGATGACTCTTCTAAGGTTGAAGAAGAGAAGCACTTAGACATCACAAGAGGCAAAGAGAGTTTCAGTGAAATGCACCAAGAGAAATTAGAGACTTGCTCATTGCCTTCCCTGTATCACAATCTGTTGAGTAAGAAAGGCATTCACAAAGATGACCAGAATAAGACTCACTCACCTGATTCATCCCTGTCCACCATATCCTCATCATCATCTCAATCATCCTTCACTAAGATCAGAAGCAATTCTACTAAAGTCTCTAATATTTTTCGAAATTGGATCACTTGTGGCACAGTGGAAACAAATGATGCAGCACTCATCCTGATGAACCCGGGTCAAACAAAAATTTCGAAGGAACCCAGCAACATGCCTGAAACAAAAGCTGAGATTTGTAAGGGAGACCGGTTGGGAGGATCAGAGAGGTGCTTTAGGACTTCTTGGGGTCATCAAGACCAGAAACAGCAATATGGCGCAAGAAAAAGCTTTGATGGAGAGGAAACAAACAGGAGCAGGAAAAAGTTAGGCGACTTGCTTAATCAAAGCTCTTGCAAACCATTTGGTGGACCAATTTGCTCGCAATGTGGGAAGTCGTTTAAGCCTGAGAAAATGTACAAACACATGAAGTCTTGTAAAGGAATGAAAGCCTTGGGAAAGTCAGCTCCAAATGTTGAGGAGGCACAGCTTCCGAGATCATCAACTTCATCCCATACACATTACTTTTTGACCAACTAA 1410 0.4262 MYSMAMESSKGYSHYTKEDLHIMKSKSKKNNTPREIEMEGKGLGEVRRLHIIYFLSQIGGRADHPHLIRVLHLTRNGVYLRDVKRWLGELRGKDLPEAFSWSYKRRYKSGYVWQDLLDDDLITPISDNEYILKGSQIHTTPFATTPSLEEKKAAVCDINAEKMCPQLQVVEDKEHQHQQQRKPPQSLAEEESQVQTDQNSKTNSPTKGSSEISQDSLVFSSDRSSVTDDDSSKVEEEKHLDITRGKESFSEMHQEKLETCSLPSLYHNLLSKKGIHKDDQNKTHSPDSSLSTISSSSSQSSFTKIRSNSTKVSNIFRNWITCGTVETNDAALILMNPGQTKISKEPSNMPETKAEICKGDRLGGSERCFRTSWGHQDQKQQYGARKSFDGEETNRSRKKLGDLLNQSSCKPFGGPICSQCGKSFKPEKMYKHMKSCKGMKALGKSAPNVEEAQLPRSSTSSHTHYFLTN 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00713 469 PANTHER UPSTREAM OF FLC PROTEIN (DUF966) 36 451 IPR010369 -
Viun1g00713 469 MobiDBLite consensus disorder prediction 181 225 - -
Viun1g00713 469 MobiDBLite consensus disorder prediction 373 394 - -
Viun1g00713 469 MobiDBLite consensus disorder prediction 226 249 - -
Viun1g00713 469 Pfam Protein SOSEKI, plant 50 346 IPR010369 -
Viun1g00713 469 MobiDBLite consensus disorder prediction 451 469 - -
Viun1g00713 469 MobiDBLite consensus disorder prediction 171 249 - -
Viun1g00713 469 MobiDBLite consensus disorder prediction 276 304 - -
Viun1g00713 469 MobiDBLite consensus disorder prediction 447 469 - -
Viun1g00713 469 MobiDBLite consensus disorder prediction 285 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00713 Viun-Chr1 7083562 7094655 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun1g00713 DUF966 7.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00713 - - vun:114179809 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g00713 1 7083562 7094655 Viun1g00713 1 7083562 7094655 ECH