Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00666 ATGGAGGTTGATTTGAATGAAAATTTAGATGGAATAGAAGAGCGACTGAGAAGACTAGAAGGTGCAGCTTTTAGGGCAAGGCAACGTCAGAGGCGACGACTGAGTCATGCTCCGATTCAGATCGTTAACCACGCCGGAGAAGTGGTTACAGTGGCTCATCTTCAAGATGAAGAAGTGGTGCACGGTGGTGATTTTGGAGGAGAAATTACAGAAGAAACAAAGGGTAAAAGAAAGGCTAGTTATTTGGTTGCTAAAGCATTAGGGTTGAGAACCAATGAAGGTGAGGGTTTTGCTGCAAAGTTGTTTCACTGTAATGTGTGTTTGAAGAGGGCAAAGGATCCTGTTTTGACTTGTTGTGGTCACTTGTTTTGTTGGGCTTGCTTTCACAAGTTGCCATTGCCATGTTCTTATTCAAAGGCAAAGGAATGTCCAGTTTGTGAAGGAGAGGTCACAGATGAAAGTCTTACCACAATATATGGCAATTCAAATGTTCATAGTGAAGTTGATGATGAAGCAAGTAATGAAATTCCTCCCAGACCCTGTTCCAGGAGGGTTGAGAGCACTAGGCAGATATTCAGAAATTGA 585 0.4256 MEVDLNENLDGIEERLRRLEGAAFRARQRQRRRLSHAPIQIVNHAGEVVTVAHLQDEEVVHGGDFGGEITEETKGKRKASYLVAKALGLRTNEGEGFAAKLFHCNVCLKRAKDPVLTCCGHLFCWACFHKLPLPCSYSKAKECPVCEGEVTDESLTTIYGNSNVHSEVDDEASNEIPPRPCSRRVESTRQIFRN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00666 194 Coils Coil 2 29 - -
Viun1g00666 194 ProSiteProfiles Zinc finger RING-type profile. 104 147 IPR001841 -
Viun1g00666 194 SMART ring_2 104 146 IPR001841 -
Viun1g00666 194 SUPERFAMILY RING/U-box 100 156 - -
Viun1g00666 194 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 77 189 IPR045103 GO:0005783|GO:0006511|GO:0061630
Viun1g00666 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 160 IPR013083 -
Viun1g00666 194 Pfam zinc-RING finger domain 103 147 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00666 Viun-Chr1 6575859 6577238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00666 39 193 C3H Transcription Factor Family AT3G58030 36.774 2.57e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00666 - - gmx:100778919 206.068