Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00664 ATGGAACTTGGTTTGAGCTTAGGAGACTCTTCAAGGCCTTTGCTTGGTTTCATGGAAAAGCCTCGTGAAGCCTCCAACCAACTGGGGTTAGGCTTCAGCACCACGTTATCAATTGGGCCAGTCATCACTGCACAAAAGGATCACCAAGATGAACAAGAAGATTTTGAAGAAGAAGAAGAACAAGAAACAAAGCCAAAGAAGAGCAACAACACTCACACAACAGAAGATCCTTCCGAACCCAACCCAGTTCTGCATCAGCTCGATCTTCTCCCTCAACTCTATCTCCCATGGCACCCTCCTTCTGAAAACGGGAGTTTGTCATCTGAGTTGGGAGGTTCTTCCAGGGGGTTGGACGTGAACGCGCAGCCGCCGCAGGCGGAGGATGAGGCGGAGGAGGTGGCGGCGCTGTCATCATCTCCGAACAGCGCAGCTTCGTCGTTTCAAATGGATCTCTGCATATACAACAGAGGAGGGAGTTTCTACAAAAGGAACTACGAGGGTGAAGCTTATGATCAAAGGGCCTCTTCAAGAGCCAGCGATGAGGACGATAACAACGGTAGCGGCGGCGGAAACGCCAGAAAGAAACTCAGACTCTCCAAGGAACAATCTGCGTTCCTTGAAGAGAGTTTCAAAGAACACAACACTCTTAATCCTAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTACGACCTCGCCAAGTAGAAGTGTGGTTTCAAAACCGAAGGGCAAGGACGAAGTTGAAGCAAACAGAAGTGGATTGTGAGTACTTAAAAAGGTGTTGTGAGACACTAACAGAAGAGAATAGAAGACTTCACAAGGAGCTTCAAGAATTGAGGGCTTTGAAGAGTTCAAACCCGTTCTACATGCAATTACCAGCCACAACTTTGACCATGTGTCCTTCTTGTGAACGTGTGGCCACAAATTCCACATCCACATGCTCCTCTCTCAGTGCTCCTAATGCCACCATGAATGCAAATTCAGGAGCCATGGCCATTGTGAAAAGCAGTGCCAGCAACAATGATTCACCCTCCAAACCCATTGGGTTCCCATTTGGTAAACCCAGGTTTCATCCATTTGTCCACACCAGCCAACAACACCAATCCCCATCATCTTGA 1119 0.4772 MELGLSLGDSSRPLLGFMEKPREASNQLGLGFSTTLSIGPVITAQKDHQDEQEDFEEEEEQETKPKKSNNTHTTEDPSEPNPVLHQLDLLPQLYLPWHPPSENGSLSSELGGSSRGLDVNAQPPQAEDEAEEVAALSSSPNSAASSFQMDLCIYNRGGSFYKRNYEGEAYDQRASSRASDEDDNNGSGGGNARKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKSSNPFYMQLPATTLTMCPSCERVATNSTSTCSSLSAPNATMNANSGAMAIVKSSASNNDSPSKPIGFPFGKPRFHPFVHTSQQHQSPSS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00664 372 SMART halz 249 292 IPR003106 GO:0006355|GO:0043565
Viun1g00664 372 MobiDBLite consensus disorder prediction 1 20 - -
Viun1g00664 372 Pfam HD-ZIP protein N terminus 29 147 IPR006712 GO:0005634
Viun1g00664 372 Coils Coil 41 61 - -
Viun1g00664 372 MobiDBLite consensus disorder prediction 101 120 - -
Viun1g00664 372 SMART HOX_1 191 253 IPR001356 GO:0003677
Viun1g00664 372 CDD bZIP 242 281 - -
Viun1g00664 372 MobiDBLite consensus disorder prediction 336 372 - -
Viun1g00664 372 ProSiteProfiles 'Homeobox' domain profile. 189 249 IPR001356 GO:0003677
Viun1g00664 372 CDD homeodomain 193 250 IPR001356 GO:0003677
Viun1g00664 372 Gene3D - 197 247 - -
Viun1g00664 372 Pfam Homeodomain 193 247 IPR001356 GO:0003677
Viun1g00664 372 ProSitePatterns 'Homeobox' domain signature. 224 247 IPR017970 GO:0000981|GO:0006355
Viun1g00664 372 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 64 324 - -
Viun1g00664 372 MobiDBLite consensus disorder prediction 41 142 - -
Viun1g00664 372 FunFam Homeobox-leucine zipper protein 18 177 254 - -
Viun1g00664 372 Coils Coil 262 285 - -
Viun1g00664 372 SUPERFAMILY Homeodomain-like 179 250 IPR009057 -
Viun1g00664 372 Pfam Homeobox associated leucine zipper 249 283 IPR003106 GO:0006355|GO:0043565
Viun1g00664 372 MobiDBLite consensus disorder prediction 172 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00664 Viun-Chr1 6424097 6426381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00664 115 305 Homeobox Transcription Factor Family AT3G60390 59.596 4.77e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun1g00664 HD-ZIP_N 5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00664 K09338 - gmx:100778742 525.398