Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00648 ATGTGGAGATTTAAGCCATTCGGCCACAAAGAACAGACTGGTCTTGAAGGCCGCACTGTAGATGTTGGCAATCTTAAAATAAACATTGTTAAGGCCATTGCGGAAGGAGGGTTCTCCTGTGTCTACCTAGCTCGTGATGCTGTACATATGTCAAAGCAATATGCCTTGAAGCACATAATATGCAATGATGAGGAATCACTTGGATTGGTAAAGAAGGAGATATCTGTGCTTAAGATGCTGGTAGGACATCCCAATGTTGTCACACTTCATGCACATTCCATCTTTGATATGGGGAGGACGAAGGAGGCATTCCTTGTGATGGAATTTTGTGAGAGGTCTCTGGTCAATGTGCTGGAGAACCGCGGAGCTGGTTATTTTGATGAGAAACAGGTTCTTTTGATCTTCAGGGATATCTGTAATGCAGTTTTTGCTATGCATTGCCTGTCCCCACCTATTGCACACCGAGACTTGAAAGCGGAGAATCTTTTATTAAGTTCAGATGGCTTATGGAAGTTATGTGATTTTGGAAGCACTTCCACTAATCACAAACGTTTTGAAAAGCCAGAAGAAATGGGGATCGAGGAAGACAATATCAGGAAGTATACAACTCCAGCCTACAGGGCCCCTGAGATGTGGGATCTGTTCCTGAGAGAGGTCATTAATGAGAAGGTAGACATATGGGCTCTTGGATGTCTTCTTTTCCGCATATGCTACTTCAAAAGTGCATTTGATGGGGAATCAAAGCTTCAAGTCTTAAATGGCAACTACCGTATTCCCGATTTACCAAAATACAGTTCATCTATCACGGACTTGATAAGAGACATGCTCCAAGCTAGACCAGATGACAGACCAGATATCACGCAGGTCTGGTTTCGTGTTAACGAGCAACTGCCCATTAATCTACAGAAGTCATTACCTGACAGGCCACCTGAATCACCCTCTCCCAACAATCATGAAGGTATGCCCTCAAACAGATCACCTCCAATGCCTCGTAGGAACCCACCTCCTCCACCTTCATCCGGAGAACCCAAAACTACACCACAGCCATCCCTTGCTTCTAGGGGAGGGAGCAGTGGGGGGCAGCTTGGTGCTTTCTGGTCCAGTCAGCACGCAAAGGATCCACTTGTCACTGAGGACAAGAGCAAGCCAATTTTTGATGAAGAACCATCTAGTCACCATATGCCACTGAAACATGATAGACTTCGTCCTGAAAATGAACAATTAGCCAAAAATGTTAGTACTAGCAAAGTGGTTAATGCACAAACTCATACTGTGAAAAGCAGTACACATGGAAAATTAAACAAGCCTGATGCCAAACCCTCTAAGGATTTTGAAATAAACTTATTCCATGATAAAGATCGTATGGAGAATACAGCTAACTTTCAAAACCAGGCTTTTAACACTTTTGTTGCTGAATTCGATACCAATAAGCTCAACACTGGACTTAATAACAAATCCGAAAGGGAACAAGCATTAGAGGTTGAAGTGGAGAAACTCAAAGAACAGCTGAAGGAAGCTAACGTGGAAAAAGCTGAAATAACATCAAAGTTTGAAAAGCTTTCTGCTATCTGCAGATCCCAAAGGCAAGAATTGCAGGATCTCAAGCAAGCACTGGCAAGTCGGACTCCTTCACCAAGTAGAGAAGGTTTGAAAACCTCTCCTGCAATTACATCATCTGCACCTATGGATAGAACTGAATGGAAAACTCCCAGTTCAGAACCTAAGTCATGGCAAGCTTTTCCTGAGGAACCCCAACAACAAAAGTCCCTTTCAACAGGAAATACTACCAAATCAGTCAGGTCAAATAATGGCCGGCAGAACAAGCAACCTGTTCCACTGGCTACTAATTTTGATTCATGGGGTTTTGGAACTGATAGCTTCAGTGCTGTACCTACTGGCAGCTCACAGATGCAAAGACCTAGCAGTGCCGGAGGTAAGTCTCAGGGTTTTGATGAGGCAAAGGCCTTTGAGAGCAAACCAACTTCTCAACCAGCTGGTTGGGCTGGTTTTTAA 2013 0.4372 MWRFKPFGHKEQTGLEGRTVDVGNLKINIVKAIAEGGFSCVYLARDAVHMSKQYALKHIICNDEESLGLVKKEISVLKMLVGHPNVVTLHAHSIFDMGRTKEAFLVMEFCERSLVNVLENRGAGYFDEKQVLLIFRDICNAVFAMHCLSPPIAHRDLKAENLLLSSDGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLREVINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKYSSSITDLIRDMLQARPDDRPDITQVWFRVNEQLPINLQKSLPDRPPESPSPNNHEGMPSNRSPPMPRRNPPPPPSSGEPKTTPQPSLASRGGSSGGQLGAFWSSQHAKDPLVTEDKSKPIFDEEPSSHHMPLKHDRLRPENEQLAKNVSTSKVVNAQTHTVKSSTHGKLNKPDAKPSKDFEINLFHDKDRMENTANFQNQAFNTFVAEFDTNKLNTGLNNKSEREQALEVEVEKLKEQLKEANVEKAEITSKFEKLSAICRSQRQELQDLKQALASRTPSPSREGLKTSPAITSSAPMDRTEWKTPSSEPKSWQAFPEEPQQQKSLSTGNTTKSVRSNNGRQNKQPVPLATNFDSWGFGTDSFSAVPTGSSQMQRPSSAGGKSQGFDEAKAFESKPTSQPAGWAGF 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00648 670 PANTHER SERINE/THREONINE PROTEIN KINASE 1 653 - -
Viun1g00648 670 MobiDBLite consensus disorder prediction 534 645 - -
Viun1g00648 670 MobiDBLite consensus disorder prediction 534 670 - -
Viun1g00648 670 MobiDBLite consensus disorder prediction 327 344 - -
Viun1g00648 670 FunFam probable serine/threonine-protein kinase DDB_G0280111 10 305 - -
Viun1g00648 670 SMART serkin_6 27 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00648 670 CDD STKc_GAK_like 26 298 - -
Viun1g00648 670 MobiDBLite consensus disorder prediction 412 429 - -
Viun1g00648 670 ProSiteProfiles Protein kinase domain profile. 27 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00648 670 Coils Coil 482 537 - -
Viun1g00648 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Viun1g00648 670 MobiDBLite consensus disorder prediction 345 365 - -
Viun1g00648 670 Pfam Protein kinase domain 30 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00648 670 MobiDBLite consensus disorder prediction 300 365 - -
Viun1g00648 670 Gene3D Transferase(Phosphotransferase) domain 1 10 306 - -
Viun1g00648 670 SUPERFAMILY Protein kinase-like (PK-like) 28 341 IPR011009 -
Viun1g00648 670 MobiDBLite consensus disorder prediction 412 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00648 Viun-Chr1 6188737 6193365 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00648 26 292 Miscellaneous Gene Families AT2G34180 30.851 1.01e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Viun1g00648 Pkinase 5.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00648 K08853 - gmx:100808507 1114.37