Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00640 ATGGGAAAGTTAGCGATCATGTTGCAGGGTAAGTGCAAGAACCGCAAGGAATCATCATCATGGCCATTGACAAAATGCTTTTACCACACCAATAGAAGAGACACTGGGGCCAGAATTGAAGAAGAATGGAACGTTGATTTTTCTGATCTCTTCATCGGACACAGGTTTTCTCACGGTGCTCACAGTAAAATTTACCATGGCATATACAAGCAGCAACATGTTGCAATCAAAATTTTCGAGGTACGAGAATGCGAGGAAGAGGGAAACCTTAGATCGCTTCTGGAGACACAATTTCTGAGAGAAGTCACACATCTACCTCGTATGCAGCATCAGAACGTGGTGAGTTTCGTAGCAGCATGCAGAGATTCTGAATCTTATTACATTCTCACGGAGTATCAACAAAAGGGTTCTTTGAGGGCACATTTGAACATGCTCGAGTCCAAGCCAATCTCTCTGAGGAAGATCATACGTTTTGCTTTGGATATTGCACGTGGAATGGAATACGTGCATGCACAAGGCATCATTCACAGAGACCTTAAACCTGAGAATGTGCTTGTAGACAAGAACTGTCGCCTCAAAATTGCTGATTTTGGCATTGCTTGTGTTGCTTCAAAGTGCGATTCATTGAGGGGAACGTATCGTTGGATGGCACCAGAAATGATCAAAGGAAAATGCTATGGAAGGAAGGTTGATGTGTATAGTTTTGGGCTTATTTTGTGGGAGTTGGTGAGTGGAACACTGCCATTTGCAGACATGAATCCGGTTCAGGTTGCTGTTGCAGTGATTGATAAGAATTCAAGGCCTGTTATTCCCACACATTGCCCACATGGTTTGAGAGATTTGATTAATCAGTGTTGGGCGTTGAAACCACAGAAGAGACTTGAATTCTGTCAGATTGTTCGAGTTTTGGAGCAAATGATCAAAGACATTGTTCTCTAA 939 0.4271 MGKLAIMLQGKCKNRKESSSWPLTKCFYHTNRRDTGARIEEEWNVDFSDLFIGHRFSHGAHSKIYHGIYKQQHVAIKIFEVRECEEEGNLRSLLETQFLREVTHLPRMQHQNVVSFVAACRDSESYYILTEYQQKGSLRAHLNMLESKPISLRKIIRFALDIARGMEYVHAQGIIHRDLKPENVLVDKNCRLKIADFGIACVASKCDSLRGTYRWMAPEMIKGKCYGRKVDVYSFGLILWELVSGTLPFADMNPVQVAVAVIDKNSRPVIPTHCPHGLRDLINQCWALKPQKRLEFCQIVRVLEQMIKDIVL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00640 312 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 38 306 - -
Viun1g00640 312 Gene3D Transferase(Phosphotransferase) domain 1 135 311 - -
Viun1g00640 312 Gene3D Phosphorylase Kinase; domain 1 38 134 - -
Viun1g00640 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Viun1g00640 312 CDD STKc_MAP3K-like 58 303 - -
Viun1g00640 312 Pfam Protein tyrosine and serine/threonine kinase 53 303 IPR001245 GO:0004672|GO:0006468
Viun1g00640 312 PRINTS Tyrosine kinase catalytic domain signature 230 252 IPR001245 GO:0004672|GO:0006468
Viun1g00640 312 PRINTS Tyrosine kinase catalytic domain signature 168 186 IPR001245 GO:0004672|GO:0006468
Viun1g00640 312 PRINTS Tyrosine kinase catalytic domain signature 211 221 IPR001245 GO:0004672|GO:0006468
Viun1g00640 312 PRINTS Tyrosine kinase catalytic domain signature 130 143 IPR001245 GO:0004672|GO:0006468
Viun1g00640 312 PRINTS Tyrosine kinase catalytic domain signature 274 296 IPR001245 GO:0004672|GO:0006468
Viun1g00640 312 FunFam Kinase suppressor of Ras 1 39 133 - -
Viun1g00640 312 ProSiteProfiles Protein kinase domain profile. 50 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00640 312 SMART serkin_6 50 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00640 312 SUPERFAMILY Protein kinase-like (PK-like) 20 303 IPR011009 -
Viun1g00640 312 PIRSF ILK 12 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00640 Viun-Chr1 5954742 5956066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00640 5 306 MAP Kinase Kinase Kinase AT5G58950 52.131 5.58e-112 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Viun1g00640 PK_Tyr_Ser-Thr 1.6e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00640 - - var:108332641 577.4