Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00628 ATGGCTTCTCTTCACTCTTCTCTTCTATTGCCTCCGAATCTCCTTTCCCTTACTACTCCTTCAAGTTCCCCTACCCACATTCTCTTCAACCTGAGATCCTCCACCACCCACTTGCGACCCCTTTTCACCACACGGCGCCGTTTCCGGAGACCCTTTGCGGTGGCTGAACAGGCCACGGTGACGGAGGCCGCCAGAAGGCTCTACGTTGGAAACATTCCCCGCACTGTCAACAACGATGAGCTCGCCAAGATTGTTCAAGAACATGGCGTTGTTGAGAAAGCTGAGGTTATGTATGATAAATATTCTGGAAGGAGCCGTCGCTTTGCGTTTGTTACAATGAAAACTGTTGAGGACGCAAATGCTGTGATTGAGAAACTTAACGGCACTGAAATTGGAGGGCGTGAGATCAAAGTAAATGTTACCGAAAAACCTTTATCAGGATCAGATTTGCCTTCATTCCAAGCTGAGGAATCTCAATTTATTGACAGTCCCCACAAGGTGTATGTGGGAAATCTAGCCAAGACAGTAACAACTGATACTCTTAAAAAGTTTTTTTCTGAGAAGGGAAAAGTTCTGAGTGCCAAGGTTTCACGGGTTCCTGGTACCTCAAAATCCAGTGGGTATGGTTTTGTTACCTTTTCATCAGAAGAGGATGTAGAAGCTGCAATCTCGTCTCTCAACAATTCTTCATTAGAAGGGCAAAAAATCCGAGTGAACAAGGCATAG 726 0.4573 MASLHSSLLLPPNLLSLTTPSSSPTHILFNLRSSTTHLRPLFTTRRRFRRPFAVAEQATVTEAARRLYVGNIPRTVNNDELAKIVQEHGVVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAVIEKLNGTEIGGREIKVNVTEKPLSGSDLPSFQAEESQFIDSPHKVYVGNLAKTVTTDTLKKFFSEKGKVLSAKVSRVPGTSKSSGYGFVTFSSEEDVEAAISSLNNSSLEGQKIRVNKA 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00628 241 SUPERFAMILY RNA-binding domain, RBD 159 241 IPR035979 GO:0003676
Viun1g00628 241 PANTHER OS02G0815200 PROTEIN 62 240 - -
Viun1g00628 241 Gene3D - 49 150 IPR012677 -
Viun1g00628 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 237 IPR000504 GO:0003723
Viun1g00628 241 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 137 IPR000504 GO:0003723
Viun1g00628 241 SUPERFAMILY RNA-binding domain, RBD 57 145 IPR035979 GO:0003676
Viun1g00628 241 SMART rrm1_1 66 139 IPR000504 GO:0003723
Viun1g00628 241 SMART rrm1_1 166 239 IPR000504 GO:0003723
Viun1g00628 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 241 IPR000504 GO:0003723
Viun1g00628 241 CDD RRM2_PSRP2 163 241 - -
Viun1g00628 241 Coils Coil 236 241 - -
Viun1g00628 241 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 143 IPR000504 GO:0003723
Viun1g00628 241 FunFam 30S ribosomal protein 2, chloroplastic 152 241 - -
Viun1g00628 241 CDD RRM1_PSRP2_like 66 145 - -
Viun1g00628 241 Gene3D - 151 241 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00628 Viun-Chr1 5808729 5812343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00628 51 238 Eukaryotic Initiation Factors Gene Family AT1G22760 27.128 8.58e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00628 K13126 - gmx:100783567 340.887