Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00627 ATGCTTGTAGATGTAGGATCTGATGATTGTGTCCACATGGTAGGAATCTATGGACTCGGTGGAGTTGGTAAAACCACACTTGCTCTTGCACTTTACAATTCCATCGCTGACCATTTTGAAGGTTTGTGTTTCCTTGAAAATGTGAGAGAGAATTCAAACAAACAAGGCTTACATCATCTTCAGAGAATCCTTCTTTCTGAAATGGTTGGAGAAAATAATATCAACATAGGTAGTGTGAGACAAGGAATTTCAATGATGCAGCATAGGCTACGGCAGAAGAAGATTCTTTTGATTCTAGATGATGTTGACAAGCACGAACAGTTACAGGCAATTGTTGGAAGCCCTGATTGGTTTGGTCCCGGCAGTAGAGTCATCATCACAACTAGGGACAAACAATTGTTGTCATGTCACTTGGTTGAAAAATTATATGAAGTGAAGAAGTTGGAAAAGAACGATGCTCTTCGATTGCTCAGTTGGAAAGGTTTTAGAACCGAAGAAGTTGATACAAGTTACTCCAATGTCATGGATAGTGTACTAGCTTATGCTTCTGGCCATCCATTGGCTTTGGAAGTAATCGGTTCGAAGTTGTTCAGAAAAAGTGTAGAAGAATGGGAATCTGCCATCAAACAGTATGAGAAAATTCCTATCAGTCAAATCCTGGAGGTGCTTAAAATAAGTTTTGATGCTTTAGAGGAAGTAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATGCATTGTCAGATATAGAAGATATTCTTCGTGCCCAATATGGTCATAGCATGAAATATCATATTGGGGTGTTGGTTGAAAAATCTCTCATAAAATACAAATGGAAATTTGGAGTTACAATGCATGACTTGATAGAAGACATGGGTAAAGAAATTGTCCGACAGCAATCACCAAAAAGGCCAGGGAAGCGCAGTAGATTATGGTCACCAGAAGATATAATTCAAGTTTTGGAAGACAACTCGGGAAGTGGAGAAATTGAAATCATATGTTTGAATTCTTCATTACCTGACAAAGAAGAAATAATAGAATGGAACAGAAAGGCCTTCAAGAAGATGAAAAACCTCAAAACACTTATCATTAAAAAAGGTAATTTTTCGGAAGGTCCTAAATATCTTCCAAATAGTTTAAGAGTACTGGAATGGTTGAAATATCCTTCACAAGGGCTACCGCCAGATTTTCGTTCAAAGGAACTTGCCATATGCAAATTACCTACAAGTTGTTTTGGGTCACTCGAATTGGCTGAGTTATCAAAGAAATTCATGAATATGACTCTTTTGGATTTTGAAGAATGTCAAGGTTTGACACAGATACCTGATGTATCTGGGATGCCAAATTTAGAAAAAATTTCATTCAAGAATTGTAAGAGTTTAAATACAATCCATGACTCCATTGGGTTCCTAGGTAAGCTGAACTCCTTGAATGCTGTTGGCTGCAGCAAGCTTAGGAGTTTTCCCCCCCTCAAATTGACTTCTCTGAAAAATCTTGAACTTTCATATTGTTACGGTCTCGAGAGCTTCCCAGAAGTATTAGGAAAAATGGGAAAGATAACAAAACTTGTCTTGGAGGACTGTAACATAAAAGAATTGCCATTTTCATTTCAAAATCTCACTGAGCTTCAGACATTACAGTTGCGTTTCTGTCCAATGTTACGGTTACCAAGTAGTATAGTCATGATGCCAAAACTGGCCGAAATTATTGTTTGGGAATCTAAAGGATGGCTATTTCCAAAACAAGTTGAGGTTGAAGAGAAAGTAAGTTCAATGGTGTCTTCAAATGTAGATTGTCTTCTTCTCCCACGGTGCAAACTCTCCGATGATTTTCTCCCAATAGCTCTTGCATGGTTTGCTAATGTAAAAGAGTTAGACCTGTCATGGAACAATTTCACGGTTCTTCCGGAATGTATTAGCAATTGTCATTTTTTATCTAAGCTTACTTTAGATGGCTGTCATAGTCTTCGAGAGATCAGAGGGATTCCACCAAACATTCAACTTTTACTAGCAGTAGATTGTAAATCCTTCACTTCTTCTTGCAGAAGCACTTTACTGAATCAGAAACTGCATGAGGCTGGAAACACCATGTTTCGGTTGTCAGGAGCAAGCTTTCCAGAATGGTTCGATCACCACAATCAGGGACCATCGTGTTCTTTCTGGGTTGGCAACAAATTCCCTTCAATTGCTCTTTGTATTGCTATTGGACCAGCTCATTTGGAACATGTTACAATTGATAGACCTATCATAAACATCAATGGCGTCAAATGTTCGCTTCATGGGGAGGAAAAACCTTATTTAAATATGCTCCCTCATCACACATATCTTTTTGATTTGCAACATATAGTTTTTTCAGATTATCTAGACAGATTTGTTACAGAAAATGAATGGAACCACGTGGAGATTACATACTCAGTCAAGCAGAGATTCAATGAAAAAGACAAACATGCGGTGACCCCAGTCTCTGTAGAAAATGGAATCTATGTGTTGAAACAGAGGAGCAGCATGGAGGATATTCAATTCACTGATCCCCACAAAAAGAGAAGATTAGATGTTGATCCAGAGTAG 2577 0.3815 MLVDVGSDDCVHMVGIYGLGGVGKTTLALALYNSIADHFEGLCFLENVRENSNKQGLHHLQRILLSEMVGENNINIGSVRQGISMMQHRLRQKKILLILDDVDKHEQLQAIVGSPDWFGPGSRVIITTRDKQLLSCHLVEKLYEVKKLEKNDALRLLSWKGFRTEEVDTSYSNVMDSVLAYASGHPLALEVIGSKLFRKSVEEWESAIKQYEKIPISQILEVLKISFDALEEVEKSVFLDIACCFKGYALSDIEDILRAQYGHSMKYHIGVLVEKSLIKYKWKFGVTMHDLIEDMGKEIVRQQSPKRPGKRSRLWSPEDIIQVLEDNSGSGEIEIICLNSSLPDKEEIIEWNRKAFKKMKNLKTLIIKKGNFSEGPKYLPNSLRVLEWLKYPSQGLPPDFRSKELAICKLPTSCFGSLELAELSKKFMNMTLLDFEECQGLTQIPDVSGMPNLEKISFKNCKSLNTIHDSIGFLGKLNSLNAVGCSKLRSFPPLKLTSLKNLELSYCYGLESFPEVLGKMGKITKLVLEDCNIKELPFSFQNLTELQTLQLRFCPMLRLPSSIVMMPKLAEIIVWESKGWLFPKQVEVEEKVSSMVSSNVDCLLLPRCKLSDDFLPIALAWFANVKELDLSWNNFTVLPECISNCHFLSKLTLDGCHSLREIRGIPPNIQLLLAVDCKSFTSSCRSTLLNQKLHEAGNTMFRLSGASFPEWFDHHNQGPSCSFWVGNKFPSIALCIAIGPAHLEHVTIDRPIININGVKCSLHGEEKPYLNMLPHHTYLFDLQHIVFSDYLDRFVTENEWNHVEITYSVKQRFNEKDKHAVTPVSVENGIYVLKQRSSMEDIQFTDPHKKRRLDVDPE 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00627 858 Gene3D Ribonuclease Inhibitor 334 692 IPR032675 -
Viun1g00627 858 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 561 IPR044974 GO:0006952
Viun1g00627 858 SUPERFAMILY "Winged helix" DNA-binding domain 218 325 IPR036390 -
Viun1g00627 858 SUPERFAMILY L domain-like 347 688 - -
Viun1g00627 858 PRINTS Disease resistance protein signature 494 510 - -
Viun1g00627 858 PRINTS Disease resistance protein signature 89 103 - -
Viun1g00627 858 PRINTS Disease resistance protein signature 13 28 - -
Viun1g00627 858 PRINTS Disease resistance protein signature 182 196 - -
Viun1g00627 858 Gene3D - 147 231 IPR042197 -
Viun1g00627 858 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 241 IPR027417 -
Viun1g00627 858 SMART AAA_5 10 144 IPR003593 GO:0016887
Viun1g00627 858 Pfam NB-ARC domain 12 217 IPR002182 GO:0043531
Viun1g00627 858 Gene3D - 1 140 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00627 Viun-Chr1 5772436 5776940 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00627 11 563 WRKY Transcription Factor Family AT5G45050 30.808 2.12e-65 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00627 - - gmx:100780257 1016.53