Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun1g00626 | ATGGCTGTGCCATCATTCTCCTTTTCCTTCACCTATGACGTTTTCCTGAGCTTCAGAGGAGAAGACACTCGTTACGGTTTCACCGGAAATCTTTACAGAGCCCTTCGTGACAGAGGAATTCACACCTTCATCGACGACGAGGAGCTTCGCAAAGGAGACGAAATCACCTCTGCACTTGAGAAGGCAATCGAAGGTTCTAGAATTTTCATCATCGTTTTCTCTCTCAACTACGCCTCTTCCTCTTTTTGCTTGAACGAGCTCGCCTACATCCTTCCCCACGCTAAGAGAAATGCTTTGCTGGTTTTGCCACTCTTCTACGACGTCGTTCCTTCCCACGTGCGACACCACACGGGTAGCTTTGGAGAAGCATTGGATGCTCATGAAAAGAGGTTCAGAGGTATGAGTCAGGGTTTTGAGCTTAACATTGAGAAGCTCAACAAATGGAAGATGGCTCTGCGTCGAGCAGCTAACTTGTCTGGCTATCATTTCAAACATGGGGAGGAATATGAATACCAGTTTATCGAGAAGATAGTTAAATTGGTCTCTAACAAGATTAACCGTGTTCCTTTACACGTTGCGGATTATCAGGTAGGACTAGAAAAGCGAGTGCTGGAAGTAAAGATGCTTGTAGATGTAGGATCTGATGATTGTGTCCACATGGTAGGAATCTATGGACTCGGTGGAGTTGGTAAAACCACACTTGCTCTTGCACTTTACAATTCCATCGCTGACCATTTTGAAGGTTTGTGTTTCCTTGAAAATGTGAGAGAGAATTCAAACAAACAAGGCTTACATCATCTTCAGAGAATCCTTCTTTCTGAAATGGTTGGAGAAAATAATATCAACATAGGTAGTGTGAGACAAGGAATTTCAATGATGCAGCATAGGCTACGGCAGAAGAAGATTCTTTTGATTCTAGATGATGTTGACAAGCACGAACAGTTACAGGCAATTGTTGGAAGCCCTGATTGGTTTGGTCCCGGCAGTAGAGTCATCATCACAACTAGGGACAAACAATTGTTGTCATGTCACTTGGTTGAAAAATTATATGAAGTGAAGAAGTTGGAAAAGAACGATGCTCTTCGATTGCTCAGTTGGAAAGGTTTTAGAACCGAAGAAGTTGATACAAGTTACTCCAATGTCATGGATAGTGTACTAGCTTATGCTTCTGGCCATCCATTGGCTTTGGAAGTAATCGGTTCGAAGTTGTTCAGAAAAAGTGTAGAAGAATGGGAATCTGCCATCAAACAGTATGAGAAAATTCCTATCAGTCAAATCCTGGAGGTGCTTAAAATAAGTTTTGATGCTTTAGAGGAAGTAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATGCATTGTCAGATATAGAAGATATTCTTCGTGCCCAATATGGTCATAGCATGAAATATCATATTGGGGTGTTGGTTGAAAAATCTCTCATAAAATACAAATGGAAATTTGGAGTTACAATGCATGACTTGATAGAAGACATGGGTAAAGAAATTGTCCGACAGCAATCACCAAAAAGGCCAGGGAAGCGCAGTAGATTATGGTCACCAGAAGATATAATTCAAGTTTTGGAAGACAACTCGGGAAGTGGAGAAATTGAAATCATATGTTTGAATTCTTCATTACCTGACAAAGAAGAAATAATAGAATGGAACAGAAAGGCCTTCAAGAAGATGAAAAACCTCAAAACACTTATCATTAAAAAAGGTAATTTTTCGGAAGGTCCTAAATATCTTCCAAATAGTTTAAGAGTACTGGAATGGTTGAAATATCCTTCACAAGGGCTACCGCCAGATTTTCGTTCAAAGGAACTTGCCATATGCAAATTACCTACAAGTTGTTTTGGGTCACTCGAATTGGCTGAGTTATCAAAGAAATTCATGAATATGACTCTTTTGGATTTTGAAGAATGTCAAGGTTTGACACAGATACCTGATGTATCTGGGATGCCAAATTTAGAAAAAATTTCATTCAAGAATTGTAAGAGTTTAAATACAATCCATGACTCCATTGGGTTCCTAGGTAAGCTGAACTCCTTGAATGCTGTTGGCTGCAGCAAGCTTAGGAGTTTTCCCCCCCTCAAATTGACTTCTCTGAAAAATCTTGAACTTTCATATTGTTACGGTCTCGAGAGCTTCCCAGAAGTATTAGGAAAAATGGGAAAGATAACAAAACTTGTCTTGGAGGACTGTAACATAAAAGAATTGCCATTTTCATTTCAAAATCTCACTGAGCTTCAGACATTACAGTTGCGTTTCTGTCCAATGTTACGGTTACCAAGTAGTATAGTCATGATGCCAAAACTGGCCGAAATTATTGTTTGGGAATCTAAAGGATGGCTATTTCCAAAACAAGTTGAGGTTGAAGAGAAAGTAAGTTCAATGGTGTCTTCAAATGTAGATTGTCTTCTTCTCCCACGGTGCAAACTCTCCGATGATTTTCTCCCAATAGCTCTTGCATGGTTTGCTAATGTAAAAGAGTTAGACCTGTCATGGAACAATTTCACGGTTCTTCCGGAATGTATTAGCAATTGTCATTTTTTATCTAAGCTTACTTTAGATGGCTGTCATAGTCTTCGAGAGATCAGAGGGATTCCACCAAACATTCAACTTTTACTAGCAGTAGATTGTAAATCCTTCACTTCTTCTTGCAGAAGCACTTTACTGAATCAGAAACTGCATGAGGCTGGAAACACCATGTTTCGGTTGTCAGGAGCAAGCTTTCCAGAATGGTTCGATCACCACAATCAGGGACCATCGTGTTCTTTCTGGGTTGGCAACAAATTCCCTTCAATTGCTCTTTGTATTGCTATTGGACCAGCTCATTTGGAACATGTTACAATTGATAGACCTATCATAAACATCAATGGCGTCAAATGTTCGCTTCATGGGGAGGAAAAACCTTATTTAAATATGCTCCCTCATCACACATATCTTTTTGATTTGCAACATATAGTTTTTTCAGATTATCTAGACAGATTTGTTACAGAAAATGAATGGAACCACGTGGAGATTACATACTCAGTCAAGCAGAGATTCAATGAAAAAGACAAACATGCGGTGACCCCAGTCTCTGTAGAAAATGGAATCTATGTGTTGAAACAGAGGAGCAGCATGGAGGATATTCAATTCACTGATCCCCACAAAAAGAGAAGATTAGATGTTGATCCAGAGTAG | 3198 | 0.3965 | MAVPSFSFSFTYDVFLSFRGEDTRYGFTGNLYRALRDRGIHTFIDDEELRKGDEITSALEKAIEGSRIFIIVFSLNYASSSFCLNELAYILPHAKRNALLVLPLFYDVVPSHVRHHTGSFGEALDAHEKRFRGMSQGFELNIEKLNKWKMALRRAANLSGYHFKHGEEYEYQFIEKIVKLVSNKINRVPLHVADYQVGLEKRVLEVKMLVDVGSDDCVHMVGIYGLGGVGKTTLALALYNSIADHFEGLCFLENVRENSNKQGLHHLQRILLSEMVGENNINIGSVRQGISMMQHRLRQKKILLILDDVDKHEQLQAIVGSPDWFGPGSRVIITTRDKQLLSCHLVEKLYEVKKLEKNDALRLLSWKGFRTEEVDTSYSNVMDSVLAYASGHPLALEVIGSKLFRKSVEEWESAIKQYEKIPISQILEVLKISFDALEEVEKSVFLDIACCFKGYALSDIEDILRAQYGHSMKYHIGVLVEKSLIKYKWKFGVTMHDLIEDMGKEIVRQQSPKRPGKRSRLWSPEDIIQVLEDNSGSGEIEIICLNSSLPDKEEIIEWNRKAFKKMKNLKTLIIKKGNFSEGPKYLPNSLRVLEWLKYPSQGLPPDFRSKELAICKLPTSCFGSLELAELSKKFMNMTLLDFEECQGLTQIPDVSGMPNLEKISFKNCKSLNTIHDSIGFLGKLNSLNAVGCSKLRSFPPLKLTSLKNLELSYCYGLESFPEVLGKMGKITKLVLEDCNIKELPFSFQNLTELQTLQLRFCPMLRLPSSIVMMPKLAEIIVWESKGWLFPKQVEVEEKVSSMVSSNVDCLLLPRCKLSDDFLPIALAWFANVKELDLSWNNFTVLPECISNCHFLSKLTLDGCHSLREIRGIPPNIQLLLAVDCKSFTSSCRSTLLNQKLHEAGNTMFRLSGASFPEWFDHHNQGPSCSFWVGNKFPSIALCIAIGPAHLEHVTIDRPIININGVKCSLHGEEKPYLNMLPHHTYLFDLQHIVFSDYLDRFVTENEWNHVEITYSVKQRFNEKDKHAVTPVSVENGIYVLKQRSSMEDIQFTDPHKKRRLDVDPE | 1065 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun1g00626 | 1065 | ProSiteProfiles | TIR domain profile. | 10 | 185 | IPR000157 | GO:0007165 | |
| Viun1g00626 | 1065 | SMART | till_3 | 11 | 158 | IPR000157 | GO:0007165 | |
| Viun1g00626 | 1065 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 182 | 448 | IPR027417 | - | |
| Viun1g00626 | 1065 | PRINTS | Disease resistance protein signature | 296 | 310 | - | - | |
| Viun1g00626 | 1065 | PRINTS | Disease resistance protein signature | 389 | 403 | - | - | |
| Viun1g00626 | 1065 | PRINTS | Disease resistance protein signature | 220 | 235 | - | - | |
| Viun1g00626 | 1065 | PRINTS | Disease resistance protein signature | 701 | 717 | - | - | |
| Viun1g00626 | 1065 | Gene3D | - | 9 | 186 | IPR035897 | - | |
| Viun1g00626 | 1065 | Gene3D | Ribonuclease Inhibitor | 541 | 899 | IPR032675 | - | |
| Viun1g00626 | 1065 | Gene3D | - | 354 | 438 | IPR042197 | - | |
| Viun1g00626 | 1065 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | 12 | 769 | IPR044974 | GO:0006952 | |
| Viun1g00626 | 1065 | Pfam | TIR domain | 12 | 188 | IPR000157 | GO:0007165 | |
| Viun1g00626 | 1065 | SMART | AAA_5 | 217 | 351 | IPR003593 | GO:0016887 | |
| Viun1g00626 | 1065 | SUPERFAMILY | L domain-like | 554 | 893 | - | - | |
| Viun1g00626 | 1065 | FunFam | Disease resistance protein (TIR-NBS-LRR class) | 9 | 187 | - | - | |
| Viun1g00626 | 1065 | SUPERFAMILY | Toll/Interleukin receptor TIR domain | 7 | 161 | IPR035897 | - | |
| Viun1g00626 | 1065 | Pfam | NB-ARC domain | 219 | 424 | IPR002182 | GO:0043531 | |
| Viun1g00626 | 1065 | SUPERFAMILY | "Winged helix" DNA-binding domain | 425 | 532 | IPR036390 | - | |
| Viun1g00626 | 1065 | Gene3D | - | 187 | 348 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun1g00626 | Viun-Chr1 | 5772436 | 5777238 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun1g00626 | 4 | 776 | WRKY Transcription Factor Family | AT4G12020 | 29.713 | 1.93e-73 | 265 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun1g00626 | - | - | gmx:100780257 | 1273.84 |