Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00625 ATGGCTGTGCCATCATTCTCCTTTTCCTTCACCTATGACGTTTTCCTGAGCTTCAGAGGAGAAGACACTCGTTACGGTTTCACCGGAAATCTTTACAGAGCCCTTCGTGACAGAGGAATTCACACCTTCATCGACGACGAGGAGCTTCGCAAAGGAGACGAAATCACCTCTGCACTTGAGAAGGCAATCGAAGGTTCTAGAATTTTCATCATCGTTTTCTCTCTCAACTACGCCTCTTCCTCTTTTTGCTTGAACGAGCTCGCCTACATCCTTCCCCACGCTAAGAGAAATGCTTTGCTGGTTTTGCCACTCTTCTACGACGTCGTTCCTTCCCACGTGCGACACCACACGGGTAGCTTTGGAGAAGCATTGGATGCTCATGAAAAGAGGTTCAGAGGTATGAGTCAGGGTTTTGAGCTTAACATTGAGAAGCTCAACAAATGGAAGATGGCTCTGCGTCGAGCAGCTAACTTGTCTGGCTATCATTTCAAACATGGGGAGGAATATGAATACCAGTTTATCGAGAGGATAGTTGAATTGGTCTCTAAGAAGATTAACCGTGCTCCTTTACACGTTGGGGATTATCCAGTTGGACTAGAGGCGCGGGTGCTAGAAGTAAAGTTGCTTCTAGAAGTAGGATCTGATGATGTTGTCCACTTGGTAGGGATCCATGGACTCGGTGGAATCGGTAAAACCACACTTGCTCTTGCACTCTACAATTCCATCGCTGACCATTTTGAAGGTTTGTGTTTCCTCGAAAATGTGAGAGAGAATTCAAACAAACACGGCCTACATCATCTTCAAAGAATCCTTCTTTCTCAAGTGCTTGGAGAAAATAATATCAACATAACTAGTGTGAGACAAGGAATTTCAATGATGCAGCATAGGCTACGGCAGAAGAAGATTCTCTTGATTCTAGATGATGTTGACAAGCACGAACAGTTACAGGCAATTGTTGGAAGACCTGATTGGTTTGGTCCCGGCAGTAGAGTCATCATCACAACCAGGGACAAACAGTTGTTGTCGTGTCACTTGGTTGAAAAATTATATAAAGTGAAGAAGTTGGAAAAGAACAATGCTCTTCGACTGCTTAGTTGGAAAGGTTTTAGAACAGAAGAAGTTGATACAAGTTATTTGAACGTCATGGATCGTGTACTAGCTTATGCTTCTGGACATCCATTGGCTTTGGAAGTAATAGGTTCGAAGTTGTTTAGTAAAAGTGTAAAAGAATGGGAATCTGCCATCAAACAGTACGAGAAAATTCCTAGCAATCAAATCCTTGAGGTACTTAAAGTAAGTTTTGATGCTTTAGAGGAAGTAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGTTTCAAAGGATATGCATTGTCAGAGATAGAAGATATTCTTCGTGCTCATTATGGTGATTGCATGAAATATCATATTGGAGTGTTAGTTGAAAAATCTCTCATGAAATATGGCTATAATTCTGTAGTTACGTTGCATGACTTGATAGAAGACATGGGGAAAGAAATTGTCCGAGAGAAATCACCAAAAAATCCAGGGAAGCGCAGTAGATTATGGTCACCAGAAGATATAATTCAAGTTTTGGAAGACAATTCGGGAAGTGGAGAAATTGAAATCATATGTTTGAATTCCTCCTTACCTGACAAAGAAGAAATAGTAGGATGGAACAGAAAGGCCTTCAAAAAGATGAAAAACCTCAAAACACTTATCATTAAAAAAGGTAAATTTTCGGAAGGTCCTAAATATCTTCCAAATAGTTTAAGAGTACTTGAATGGTTGAAATATCCTTCACAAGGGCTACCACCAGATTTTCGTTCAAAGAAACTTGCCATATGCAAATTACCTTCAAGTAGTTTTGGGTCACTCGAATTGGCTGAGTTTTCAAAGAAGTTCATGAATATGACTCTTCTGAATTTTGATGAATGTGAAGGTTTAACACATATACCTGATGTGTCTGGGCTGCCAAATTTAGAAAAAGTTTCATTCAAGAATTGTAAGAGTTTAGTTACAATCCATGACTCCTTCGGGTTCCTAGTCTCGAGAGCTTCCCAGAAATATTAG 2070 0.4029 MAVPSFSFSFTYDVFLSFRGEDTRYGFTGNLYRALRDRGIHTFIDDEELRKGDEITSALEKAIEGSRIFIIVFSLNYASSSFCLNELAYILPHAKRNALLVLPLFYDVVPSHVRHHTGSFGEALDAHEKRFRGMSQGFELNIEKLNKWKMALRRAANLSGYHFKHGEEYEYQFIERIVELVSKKINRAPLHVGDYPVGLEARVLEVKLLLEVGSDDVVHLVGIHGLGGIGKTTLALALYNSIADHFEGLCFLENVRENSNKHGLHHLQRILLSQVLGENNINITSVRQGISMMQHRLRQKKILLILDDVDKHEQLQAIVGRPDWFGPGSRVIITTRDKQLLSCHLVEKLYKVKKLEKNNALRLLSWKGFRTEEVDTSYLNVMDRVLAYASGHPLALEVIGSKLFSKSVKEWESAIKQYEKIPSNQILEVLKVSFDALEEVEKSVFLDIACCFKGYALSEIEDILRAHYGDCMKYHIGVLVEKSLMKYGYNSVVTLHDLIEDMGKEIVREKSPKNPGKRSRLWSPEDIIQVLEDNSGSGEIEIICLNSSLPDKEEIVGWNRKAFKKMKNLKTLIIKKGKFSEGPKYLPNSLRVLEWLKYPSQGLPPDFRSKKLAICKLPSSSFGSLELAEFSKKFMNMTLLNFDECEGLTHIPDVSGLPNLEKVSFKNCKSLVTIHDSFGFLVSRASQKY 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00625 689 Pfam TIR domain 12 187 IPR000157 GO:0007165
Viun1g00625 689 SUPERFAMILY L domain-like 554 677 - -
Viun1g00625 689 PRINTS Disease resistance protein signature 655 671 - -
Viun1g00625 689 PRINTS Disease resistance protein signature 296 310 - -
Viun1g00625 689 PRINTS Disease resistance protein signature 220 235 - -
Viun1g00625 689 PRINTS Disease resistance protein signature 389 403 - -
Viun1g00625 689 SMART till_3 11 158 IPR000157 GO:0007165
Viun1g00625 689 SMART AAA_5 217 351 IPR003593 GO:0016887
Viun1g00625 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 448 IPR027417 -
Viun1g00625 689 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 161 IPR035897 -
Viun1g00625 689 SUPERFAMILY "Winged helix" DNA-binding domain 425 532 IPR036390 -
Viun1g00625 689 Gene3D - 354 438 IPR042197 -
Viun1g00625 689 Gene3D - 184 348 IPR027417 -
Viun1g00625 689 Gene3D - 11 183 IPR035897 -
Viun1g00625 689 Pfam NB-ARC domain 215 422 IPR002182 GO:0043531
Viun1g00625 689 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 187 - -
Viun1g00625 689 ProSiteProfiles TIR domain profile. 10 185 IPR000157 GO:0007165
Viun1g00625 689 Gene3D Ribonuclease Inhibitor 540 684 IPR032675 -
Viun1g00625 689 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 681 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00625 Viun-Chr1 5753876 5758808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00625 4 668 WRKY Transcription Factor Family AT4G12020 28.427 3.37e-60 218