LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun1g00624	ATGGCTGTGCCATCATTCTCCTTTTCCTTCACCTATGACGTTTTCCTGAGCTTCAGAGGAGAAGACACTCGTTACGGTTTCACCGGAAATCTTTACAGAGCCCTTCGTGACAGAGGAATTCACACCTTCATCGACGACGAGGAGCTTCGCAAAGGAGACGAAATCACCTCTGCACTTGAGAAGGCAATCGAAGGTTCTAGAATTTTCATCATCGTTTTCTCTCTCAACTACGCCTCTTCCTCTTTTTGCTTGAACGAGCTCGCCTACATCCTTCCCCACGCTAAGAGAAATGCTTTGCTGGTTTTGCCACTCTTCTACGACGTCGTTCCTTCCCACGTGCGACACCACACGGGTAGCTTTGGAGAAGCATTGGATGCTCATGAAAAGAGGTTCAGAGGTATGAGTCAGGGTTTTGAGCTTAACATTGAGAAGCTCAACAAATGGAAGATGGCTCTGCGTCGAGCAGCTAACTTGTCTGGCTATCATTTCAAACATGGGGAGGAATATGAATACCAGTTTATCGAGAGGATAGTTGAATTGGTCTCTAAGAAGATTAACCGTGCTCCTTTACACGTTGGGGATTATCCAGTTGGACTAGAGGCGCGGGTGCTAGAAGTAAAGTTGCTTCTAGAAGTAGGATCTGATGATGTTGTCCACTTGGTAGGGATCCATGGACTCGGTGGAATCGGTAAAACCACACTTGCTCTTGCACTCTACAATTCCATCGCTGACCATTTTGAAGGTTTGTGTTTCCTCGAAAATGTGAGAGAGAATTCAAACAAACACGGCCTACATCATCTTCAAAGAATCCTTCTTTCTCAAGTGCTTGGAGAAAATAATATCAACATAACTAGTGTGAGACAAGGAATTTCAATGATGCAGCATAGGCTACGGCAGAAGAAGATTCTCTTGATTCTAGATGATGTTGACAAGCACGAACAGTTACAGGCAATTGTTGGAAGACCTGATTGGTTTGGTCCCGGCAGTAGAGTCATCATCACAACCAGGGACAAACAGTTGTTGTCGTGTCACTTGGTTGAAAAATTATATAAAGTGAAGAAGTTGGAAAAGAACAATGCTCTTCGACTGCTTAGTTGGAAAGGTTTTAGAACAGAAGAAGTTGATACAAGTTATTTGAACGTCATGGATCGTGTACTAGCTTATGCTTCTGGACATCCATTGGCTTTGGAAGTAATAGGTTCGAAGTTGTTTAGTAAAAGTGTAAAAGAATGGGAATCTGCCATCAAACAGTACGAGAAAATTCCTAGCAATCAAATCCTTGAGGTACTTAAAGTAAGTTTTGATGCTTTAGAGGAAGTAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGTTTCAAAGGATATGCATTGTCAGAGATAGAAGATATTCTTCGTGCTCATTATGGTGATTGCATGAAATATCATATTGGAGTGTTAGTTGAAAAATCTCTCATGAAATATGGCTATAATTCTGTAGTTACGTTGCATGACTTGATAGAAGACATGGGGAAAGAAATTGTCCGAGAGAAATCACCAAAAAATCCAGGGAAGCGCAGTAGATTATGGTCACCAGAAGATATAATTCAAGTTTTGGAAGACAATTCGGGAAGTGGAGAAATTGAAATCATATGTTTGAATTCCTCCTTACCTGACAAAGAAGAAATAGTAGGATGGAACAGAAAGGCCTTCAAAAAGATGAAAAACCTCAAAACACTTATCATTAAAAAAGGTAAATTTTCGGAAGGTCCTAAATATCTTCCAAATAGTTTAAGAGTACTTGAATGGTTGAAATATCCTTCACAAGGGCTACCACCAGATTTTCGTTCAAAGAAACTTGCCATATGCAAATTACCTTCAAGTAGTTTTGGGTCACTCGAATTGGCTGAGTTTTCAAAGAAGTTCATGAATATGACTCTTCTGAATTTTGATGAATGTGAAGGTTTAACACATATACCTGATGTGTCTGGGCTGCCAAATTTAGAAAAAGTTTCATTCAAGAATTGTAAGAGTTTAGTTACAATCCATGACTCCTTCGGGTTCCTAGGTTGA	2049	0.4026	MAVPSFSFSFTYDVFLSFRGEDTRYGFTGNLYRALRDRGIHTFIDDEELRKGDEITSALEKAIEGSRIFIIVFSLNYASSSFCLNELAYILPHAKRNALLVLPLFYDVVPSHVRHHTGSFGEALDAHEKRFRGMSQGFELNIEKLNKWKMALRRAANLSGYHFKHGEEYEYQFIERIVELVSKKINRAPLHVGDYPVGLEARVLEVKLLLEVGSDDVVHLVGIHGLGGIGKTTLALALYNSIADHFEGLCFLENVRENSNKHGLHHLQRILLSQVLGENNINITSVRQGISMMQHRLRQKKILLILDDVDKHEQLQAIVGRPDWFGPGSRVIITTRDKQLLSCHLVEKLYKVKKLEKNNALRLLSWKGFRTEEVDTSYLNVMDRVLAYASGHPLALEVIGSKLFSKSVKEWESAIKQYEKIPSNQILEVLKVSFDALEEVEKSVFLDIACCFKGYALSEIEDILRAHYGDCMKYHIGVLVEKSLMKYGYNSVVTLHDLIEDMGKEIVREKSPKNPGKRSRLWSPEDIIQVLEDNSGSGEIEIICLNSSLPDKEEIVGWNRKAFKKMKNLKTLIIKKGKFSEGPKYLPNSLRVLEWLKYPSQGLPPDFRSKKLAICKLPSSSFGSLELAEFSKKFMNMTLLNFDECEGLTHIPDVSGLPNLEKVSFKNCKSLVTIHDSFGFLG	682

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun1g00624	682	Gene3D	-	11	183	IPR035897	-
	Viun1g00624	682	SUPERFAMILY	L domain-like	554	676	-	-
	Viun1g00624	682	SMART	till_3	11	158	IPR000157	GO:0007165
	Viun1g00624	682	SMART	AAA_5	217	351	IPR003593	GO:0016887
	Viun1g00624	682	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	185	448	IPR027417	-
	Viun1g00624	682	FunFam	Disease resistance protein (TIR-NBS-LRR class)	9	187	-	-
	Viun1g00624	682	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	12	675	IPR044974	GO:0006952
	Viun1g00624	682	Gene3D	-	354	438	IPR042197	-
	Viun1g00624	682	SUPERFAMILY	Toll/Interleukin receptor TIR domain	7	161	IPR035897	-
	Viun1g00624	682	SUPERFAMILY	"Winged helix" DNA-binding domain	425	532	IPR036390	-
	Viun1g00624	682	Gene3D	Ribonuclease Inhibitor	540	680	IPR032675	-
	Viun1g00624	682	Pfam	NB-ARC domain	215	422	IPR002182	GO:0043531
	Viun1g00624	682	Gene3D	-	184	348	IPR027417	-
	Viun1g00624	682	ProSiteProfiles	TIR domain profile.	10	185	IPR000157	GO:0007165
	Viun1g00624	682	Pfam	TIR domain	12	187	IPR000157	GO:0007165
	Viun1g00624	682	PRINTS	Disease resistance protein signature	220	235	-	-
	Viun1g00624	682	PRINTS	Disease resistance protein signature	296	310	-	-
	Viun1g00624	682	PRINTS	Disease resistance protein signature	389	403	-	-
	Viun1g00624	682	PRINTS	Disease resistance protein signature	655	671	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun1g00624	Viun-Chr1	5753683	5758808	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun1g00624	4	668	WRKY Transcription Factor Family	AT4G12020	28.427	2.87e-60	218

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun1g00624	-		-	gmx:100780257	939.488