Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00623 ATGGCTGTGCCATCATTCTCCTTTTCCTTCACCTATGACGTTTTCCTGAGCTTCAGAGGAGAAGACACTCGTTACGGTTTCACCGGAAATCTTTACAGAGCCCTTCGTGACAGAGGAATTCACACCTTCATCGACGACGAGGAGCTTCGCAAAGGAGACGAAATCACCTCTGCACTTGAGAAGGCAATCGAAGGTTCTAGAATTTTCATCATCGTTTTCTCTCTCAACTACGCCTCTTCCTCTTTTTGCTTGAACGAGCTCGCCTACATCCTTCCCCACGCTAAGAGAAATGCTTTGCTGGTTTTGCCACTCTTCTACGACGTCGTTCCTTCCCACGTGCGACACCACACGGGTAGCTTTGGAGAAGCATTGGATGCTCATGAAAAGAGGTTCAGAGGTATGAGTCAGGGTTTTGAGCTTAACATTGAGAAGCTCAACAAATGGAAGATGGCTCTGCGTCGAGCAGCTAACTTGTCTGGCTATCATTTCAAACATGGGGAGGAATATGAATACCAGTTTATCGAGAGGATAGTTGAATTGGTCTCTAAGAAGATTAACCGTGCTCCTTTACACGTTGGGGATTATCCAGTTGGACTAGAGGCGCGGGTGCTAGAAGTAAAGTTGCTTCTAGAAGTAGGATCTGATGATGTTGTCCACTTGGTAGGGATCCATGGACTCGGTGGAATCGGTAAAACCACACTTGCTCTTGCACTCTACAATTCCATCGCTGACCATTTTGAAGGTTTGTGTTTCCTCGAAAATGTGAGAGAGAATTCAAACAAACACGGCCTACATCATCTTCAAAGAATCCTTCTTTCTCAAGTGCTTGGAGAAAATAATATCAACATAACTAGTGTGAGACAAGGAATTTCAATGATGCAGCATAGGCTACGGCAGAAGAAGATTCTCTTGATTCTAGATGATGTTGACAAGCACGAACAGTTACAGGCAATTGTTGGAAGACCTGATTGGTTTGGTCCCGGCAGTAGAGTCATCATCACAACCAGGGACAAACAGTTGTTGTCGTGTCACTTGGTTGAAAAATTATATAAAGTGAAGAAGTTGGAAAAGAACAATGCTCTTCGACTGCTTAGTTGGAAAGGTTTTAGAACAGAAGAAGTTGATACAAGTTATTTGAACGTCATGGATCGTGTACTAGCTTATGCTTCTGGACATCCATTGGCTTTGGAAGTAATAGGTTCGAAGTTGTTTAGTAAAAGTGTAAAAGAATGGGAATCTGCCATCAAACAGTACGAGAAAATTCCTAGCAATCAAATCCTTGAGGTACTTAAAGTAAGTTTTGATGCTTTAGAGGAAGTAGAGAAGAGTGTTTTTCTTGACATTGCTTGTTGTTTCAAAGGATATGCATTGTCAGAGATAGAAGATATTCTTCGTGCTCATTATGGTGATTGCATGAAATATCATATTGGAGTGTTAGTTGAAAAATCTCTCATGAAATATGGCTATAATTCTGTAGTTACGTTGCATGACTTGATAGAAGACATGGGGAAAGAAATTGTCCGAGAGAAATCACCAAAAAATCCAGGGAAGCGCAGTAGATTATGGTCACCAGAAGATATAATTCAAGTTTTGGAAGACAATTCGGGAAGTGGAGAAATTGAAATCATATGTTTGAATTCCTCCTTACCTGACAAAGAAGAAATAGTAGGATGGAACAGAAAGGCCTTCAAAAAGATGAAAAACCTCAAAACACTTATCATTAAAAAAGGTAAATTTTCGGAAGGTCCTAAATATCTTCCAAATAGTTTAAGAGTACTTGAATGGTTGAAATATCCTTCACAAGGGCTACCACCAGATTTTCGTTCAAAGAAACTTGCCATATGCAAATTACCTTCAAGTAGTTTTGGGTCACTCGAATTGGCTGAGTTTTCAAAGAAGTTCATGAATATGACTCTTCTGAATTTTGATGAATGTGAAGGTTTAACACATATACCTGATGTGTCTGGGCTGCCAAATTTAGAAAAAGTTTCATTCAAGAATTGTAAGAGTTTAGTTACAATCCATGACTCCTTCGGGTTCCTAGGTAAGCTTAACTCCTTGAGTGCTGTTGGTTGCAGCAAGCTTAGGAGTTTTCCTCCCCTCAAATTGACTTCTCTGGAAAATCTTGAACTTTCATATTGTCACAGTCTCGAGAGCTTCCCAGAAATATTAGAAAAAATGGGAAAGATAACAGAACTTGTCTTGGAGGATTGTCACATAAAAGAATTACCATTTTCATTTCATAATCTCACCGAGCTTCAAACATTACAGTTGCGTTGGTGTCCAATATTAAGGTTACCAAGTAGTATTGTCATGATGCCAAAACTGGCCCAGATTATTGCTTGGGAATCTAAAGGATGGCTATTTCCAAAACAGGTTGATGGGGAAGAAAAAGGAAGCTCAATGGTGTCTTCAAATGTAGATTGTCTTGTTCTCTCAGGGTGCAAACTCTCAGATGACTTTTTCCCAGTAATTCCTGAATGGTTTTCTAATGTAAAAGATTTAGACCTGTCAAGGAATAATTTCACGGTTCTTCCTGAATGCATCAGCAATTGTCATTCTTTATGCAAGCTTACTTTAGATAGCTGTCATAGTCTTCAAGAGATTCGAGGGATTCCACCTAACATACGACATTTATCAGCAAGAAATTGTAAATCCTTCACTTCCTCTTGCAGAAGCACTTTACTGAATCAGAAACTGCATGAGGCTGGGAACACCATGTTTTGGTTGTCAGGAGCAAAGTTTCCAGAATGGTTCGATCACCACGGTCGGGGACCATCTTGTTCTTTCTGGGTTGGCAACAAATTCCCTTCAATTGCTCTTTGTATTGCTATTGGACAAACTCATATCGAACAAGTTGAAATCGTTGGACCTATCATGATCATCAACGGCATTGAATGTTCATTTGATGAGGAGGAGGATCCTTATTTATATATGCTCCCTCATCACACACATATTTTCGATTTGCAACATATAGTTTTTTCAGATTATCTAGACAGATATGTTTCAGAAAATGAATGGAACCATGTGGAGATCACATACTCAGTGGAGCAGAGATTCAATAAAAAAGACAAACATGCGGTGACCCCAATCTCTATAGAAAATGGAATCTATGTGTTGAAACAGAGGAGCAGCATGGAGGATATTCAATTCACTGATCCCCACAAAAAGAGAAGATTAGATGTTGTCTAA 3192 0.3972 MAVPSFSFSFTYDVFLSFRGEDTRYGFTGNLYRALRDRGIHTFIDDEELRKGDEITSALEKAIEGSRIFIIVFSLNYASSSFCLNELAYILPHAKRNALLVLPLFYDVVPSHVRHHTGSFGEALDAHEKRFRGMSQGFELNIEKLNKWKMALRRAANLSGYHFKHGEEYEYQFIERIVELVSKKINRAPLHVGDYPVGLEARVLEVKLLLEVGSDDVVHLVGIHGLGGIGKTTLALALYNSIADHFEGLCFLENVRENSNKHGLHHLQRILLSQVLGENNINITSVRQGISMMQHRLRQKKILLILDDVDKHEQLQAIVGRPDWFGPGSRVIITTRDKQLLSCHLVEKLYKVKKLEKNNALRLLSWKGFRTEEVDTSYLNVMDRVLAYASGHPLALEVIGSKLFSKSVKEWESAIKQYEKIPSNQILEVLKVSFDALEEVEKSVFLDIACCFKGYALSEIEDILRAHYGDCMKYHIGVLVEKSLMKYGYNSVVTLHDLIEDMGKEIVREKSPKNPGKRSRLWSPEDIIQVLEDNSGSGEIEIICLNSSLPDKEEIVGWNRKAFKKMKNLKTLIIKKGKFSEGPKYLPNSLRVLEWLKYPSQGLPPDFRSKKLAICKLPSSSFGSLELAEFSKKFMNMTLLNFDECEGLTHIPDVSGLPNLEKVSFKNCKSLVTIHDSFGFLGKLNSLSAVGCSKLRSFPPLKLTSLENLELSYCHSLESFPEILEKMGKITELVLEDCHIKELPFSFHNLTELQTLQLRWCPILRLPSSIVMMPKLAQIIAWESKGWLFPKQVDGEEKGSSMVSSNVDCLVLSGCKLSDDFFPVIPEWFSNVKDLDLSRNNFTVLPECISNCHSLCKLTLDSCHSLQEIRGIPPNIRHLSARNCKSFTSSCRSTLLNQKLHEAGNTMFWLSGAKFPEWFDHHGRGPSCSFWVGNKFPSIALCIAIGQTHIEQVEIVGPIMIINGIECSFDEEEDPYLYMLPHHTHIFDLQHIVFSDYLDRYVSENEWNHVEITYSVEQRFNKKDKHAVTPISIENGIYVLKQRSSMEDIQFTDPHKKRRLDVV 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00623 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 448 IPR027417 -
Viun1g00623 1063 PRINTS Disease resistance protein signature 296 310 - -
Viun1g00623 1063 PRINTS Disease resistance protein signature 701 717 - -
Viun1g00623 1063 PRINTS Disease resistance protein signature 389 403 - -
Viun1g00623 1063 PRINTS Disease resistance protein signature 220 235 - -
Viun1g00623 1063 SMART till_3 11 158 IPR000157 GO:0007165
Viun1g00623 1063 Gene3D - 7 188 IPR035897 -
Viun1g00623 1063 SMART AAA_5 217 351 IPR003593 GO:0016887
Viun1g00623 1063 Pfam TIR domain 12 187 IPR000157 GO:0007165
Viun1g00623 1063 Gene3D - 354 438 IPR042197 -
Viun1g00623 1063 SUPERFAMILY L domain-like 554 895 - -
Viun1g00623 1063 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 187 - -
Viun1g00623 1063 Gene3D - 189 349 IPR027417 -
Viun1g00623 1063 Pfam NB-ARC domain 215 422 IPR002182 GO:0043531
Viun1g00623 1063 Gene3D Ribonuclease Inhibitor 545 787 IPR032675 -
Viun1g00623 1063 SUPERFAMILY "Winged helix" DNA-binding domain 425 532 IPR036390 -
Viun1g00623 1063 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 161 IPR035897 -
Viun1g00623 1063 Gene3D Ribonuclease Inhibitor 792 922 IPR032675 -
Viun1g00623 1063 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 769 IPR044974 GO:0006952
Viun1g00623 1063 ProSiteProfiles TIR domain profile. 10 185 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00623 Viun-Chr1 5752845 5758808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00623 4 858 WRKY Transcription Factor Family AT4G12020 29.432 6.02e-72 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00623 - - gmx:100780257 1307.35