Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00622 ATGGCGCCGAAGAAGCCGAGAACCGTGTCGAGGAACCCTGAACTCATTAGGGGTATTGGAAAGTACTCAAGGTCGCAGATGTACCACAAGAGGGGCATCTGGGCCATCAAGGCCAAAAACGGCGGCGTTTTCCCTCGCCACGCCCCTACGCCTAAGCCCGACGCCCCAGCCCAGAAGCCTCCCAAGTTTTACCCTGCCGATGATGTCAAAAGGCCCCTTGTCAACAAGCACAAGCCCAAGCCTGCAAAACTCAGGGCTAGCGTTACTCCAGGAACTGTGTTGATCCTGCTTGCTGGCAGATTCAAGGGAAAGAGGGTTGTTTTCCTGAAGCAGCTTCCATCTGGATTGCTTCTTGTAACAGGGCCCTTCAAGATCAACGGTGTTCCTCTTAGAAGGGTGAACCAATCATATGTCATTGGTACATCCACAAAAGTGGACATCTCTGGTGTTAATGTTGATAAATTTGATGACAAGTACTTTTCCAAGGATGCCAAGAAGAAGAAAACAAAGGGAGAAGGCGAGTTCTTTGAGGCAGAGAAGGAGGAGAAAAATGTGCTTCCCCAAGAGAAGAAAGATGACCAGAAAACCGTGGATGCTGCTTTGTTAAAGGCAATTGAGAGTGTTCCAGACCTGAAGTCTTACTTGGGTGCTAGGTTTTCTTTGAAGGCAGGAATGAAGCCCCATGAACTAGTCTTCTAG 699 0.4907 MAPKKPRTVSRNPELIRGIGKYSRSQMYHKRGIWAIKAKNGGVFPRHAPTPKPDAPAQKPPKFYPADDVKRPLVNKHKPKPAKLRASVTPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFSKDAKKKKTKGEGEFFEAEKEEKNVLPQEKKDDQKTVDAALLKAIESVPDLKSYLGARFSLKAGMKPHELVF 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00622 232 Pfam Ribosomal protein L6, N-terminal domain 4 60 IPR005568 GO:0003735|GO:0005840|GO:0006412
Viun1g00622 232 MobiDBLite consensus disorder prediction 44 82 - -
Viun1g00622 232 FunFam 60S ribosomal protein L6 86 170 - -
Viun1g00622 232 SUPERFAMILY Translation proteins SH3-like domain 86 172 IPR008991 -
Viun1g00622 232 CDD KOW_RPL6 80 232 IPR041997 -
Viun1g00622 232 PANTHER 60S RIBOSOMAL PROTEIN L6 1 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Viun1g00622 232 Pfam Ribosomal protein L6e 125 232 IPR000915 GO:0003735|GO:0005840|GO:0006412
Viun1g00622 232 Gene3D - 86 170 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00622 Viun-Chr1 5749614 5751651 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00622 3 232 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 81.466 9.31e-122 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00622 K02934 - gmx:100784101 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g00622 1 5749614 5751651 Viun1g00622 1 5749614 5751651 ECH