Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00617 ATGGATAAGGGGGTGCCACCTAGCCTCTTCGTCAATGATGGTTCTTTCATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGAGAAAGGGAAGAATGTCAAATTAGAGAATTCTAAACCAATTAAGGTTATTTCAGGGTCTTTGTCGCCCAATCCCTCCATTACCAAAACATCTGTGGACTCGAAGGTTAATGATACTAGGAAAACATCCCAGGGTGGTTCTGGTGGCAAACTAGCTTTCAGTTTAAAACAAAAGTCAAAGCTGGTACCACCCCCTGTTAAATTGAGTGCCGATGAAGATGAAGAAGAAACAGAAGCTGGGTATATTTCAAATGATGCACCACTAAAACGACAAAAGTTAGGCCAGGATGGCATTGACCAATCATCAAGACAACTTGATGTTGCACCTCCTTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTAGCAAGTTTTGTGGCAAAAAATGGAAGGCAATTTGAGGATGTCACGCGTCAAAAAAATCCAGGGGATACACCTTTCAAATTTTTATTTGATGAGAGATGTGCTGAATACAAGTACTATGAATATCAGCTTGCTCAAGAAGAAAAGGCTCTTGCGCAGACAAGGGAATCACAGGTGCCTCGTAATGGGGGTACAAGCACTTCATCTTCCAAACAGACTAGTGGTCATCAAAGATCATCTCAGCAGCAGACATCCTACCAAATTCCTGCATCTGCTTTATATGAAAGTGCTGACAATCCAAGAGCTTCTGGATCTTCAATTCAAACATCTCCAGTAGGAATGAGTGAAGAGCCCAGTGGTTCATCAAATGCTGATTCTTTGGCACTAATGGAGTTCTACATGAAGAAAGCTGCACGGGAAGAAAAGTATAAACAACCTAAGCATTCAAAAGATGAGATGCCCCCTCCTGCCTCTCTTCTAGGCAAAAAAGGCCATCACATGGGTGATTTCATTCCTCCAGAAGAACTTGAGAAGTTCTTGGCTAGCTGTAATGATGCTGCAGCACAGAAAGCTGCAAAAGAGCATGTAGAGAGGTCTAAGATTCAGGCTGATAATGTAGGCCACAGGCTCCTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGCGGATCCAGGAAGGGTATTTCAGATCCTATCATGGCAGGTAATATTAAGAAGAATAACTTGGGGGTTGGTGCTCAGGAACCTGGGGAGGTGACTTCAGAGGATGACATATATGAGCAGTACAAGAAGCGTATGATGCTTGGTTACCGTTACAGACCCAATCCTTTGAACAATCCTCGAAAAGCTTATTACTGA 1311 0.4325 MDKGVPPSLFVNDGSFMERFKQLQQEQEKGKNVKLENSKPIKVISGSLSPNPSITKTSVDSKVNDTRKTSQGGSGGKLAFSLKQKSKLVPPPVKLSADEDEEETEAGYISNDAPLKRQKLGQDGIDQSSRQLDVAPPSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCAEYKYYEYQLAQEEKALAQTRESQVPRNGGTSTSSSKQTSGHQRSSQQQTSYQIPASALYESADNPRASGSSIQTSPVGMSEEPSGSSNADSLALMEFYMKKAAREEKYKQPKHSKDEMPPPASLLGKKGHHMGDFIPPEELEKFLASCNDAAAQKAAKEHVERSKIQADNVGHRLLSKMGWKEGEGLGGSRKGISDPIMAGNIKKNNLGVGAQEPGEVTSEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00617 436 MobiDBLite consensus disorder prediction 122 136 - -
Viun1g00617 436 Pfam Surp module 146 195 IPR000061 GO:0003723|GO:0006396
Viun1g00617 436 ProSiteProfiles G-patch domain profile. 353 400 IPR000467 GO:0003676
Viun1g00617 436 MobiDBLite consensus disorder prediction 201 274 - -
Viun1g00617 436 Pfam G-patch domain 354 397 IPR000467 GO:0003676
Viun1g00617 436 Gene3D Surp module 118 202 IPR035967 GO:0003723|GO:0006396
Viun1g00617 436 SMART surpneu2 145 199 IPR000061 GO:0003723|GO:0006396
Viun1g00617 436 MobiDBLite consensus disorder prediction 23 145 - -
Viun1g00617 436 ProSiteProfiles SURP motif repeat profile. 147 190 IPR000061 GO:0003723|GO:0006396
Viun1g00617 436 SMART G-patch_5 351 398 IPR000467 GO:0003676
Viun1g00617 436 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 2 309 IPR040169 -
Viun1g00617 436 MobiDBLite consensus disorder prediction 42 77 - -
Viun1g00617 436 SUPERFAMILY Surp module (SWAP domain) 131 197 IPR035967 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00617 Viun-Chr1 5678895 5684879 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00617 350 409 C2H2 Transcription Factor Family AT5G26610 50.820 3.62e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00617 K13096 - gmx:100786213 806.208