LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun1g00615	ATGGATAAGGGGGTGCCACCTAGCCTCTTCGTCAATGATGGTTCTTTCATGGAGAGGTTCAAGCAACTTCAACAAGAGCAGGAGAAAGGGAAGAATGTCAAATTAGAGAATTCTAAACCAATTAAGGTTATTTCAGGGTCTTTGTCGCCCAATCCCTCCATTACCAAAACATCTGTGGACTCGAAGGTTAATGATACTAGGAAAACATCCCAGGGTGGTTCTGGTGGCAAACTAGCTTTCAGTTTAAAACAAAAGTCAAAGCTGGTACCACCCCCTGTTAAATTGAGTGCCGATGAAGATGAAGAAGAAACAGAAGCTGGGTATATTTCAAATGATGCACCACTAAAACGACAAAAGTTAGGCCAGGATGGCATTGACCAATCATCAAGACAACTTGATGTTGCACCTCCTTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTAGCAAGTTTTGTGGCAAAAAATGGAAGGCAATTTGAGGATGTCACGCGTCAAAAAAATCCAGGGGATACACCTTTCAAATTTTTATTTGATGAGAGATGTGCTGAATACAAGTACTATGAATATCAGCTTGCTCAAGAAGAAAAGGCTCTTGCGCAGACAAGGGAATCACAGGTGCCTCGTAATGGGGGTACAAGCACTTCATCTTCCAAACAGACTAGTGGTCATCAAAGATCATCTCAGCAGCAGACATCCTACCAAATTCCTGCATCTGCTTTATATGAAAGTGCTGACAATCCAAGAGCTTCTGGATCTTCAATTCAAACATCTCCAGTAGGAATGAGTGAGCCCAGTGGTTCATCAAATGCTGATTCTTTGGCACTAATGGAGTTCTACATGAAGAAAGCTGCACGGGAAGAAAAGTATAAACAACCTAAGCATTCAAAAGATGAGATGCCCCCTCCTGCCTCTCTTCTAGGCAAAAAAGGCCATCACATGGGTGATTTCATTCCTCCAGAAGAACTTGAGAAGTTCTTGGCTAGCTGTAATGATGCTGCAGCACAGAAAGCTGCAAAAGAGCATGTAGAGAGGTCTAAGATTCAGGCTGATAATGTAGGCCACAGGCTCCTGTCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGCGGATCCAGGAAGGGTATTTCAGATCCTATCATGGCAGGTAATATTAAGAAGAATAACTTGGGGGTTGGTGCTCAGGAACCTGGGGAGGTGACTTCAGAGGATGACATATATGAGCAGTACAAGAAGCGTATGATGCTTGGTTACCGTTACAGACCCAATCCTTTGAACAATCCTCGAAAAGCTTATTACTGA	1308	0.4327	MDKGVPPSLFVNDGSFMERFKQLQQEQEKGKNVKLENSKPIKVISGSLSPNPSITKTSVDSKVNDTRKTSQGGSGGKLAFSLKQKSKLVPPPVKLSADEDEEETEAGYISNDAPLKRQKLGQDGIDQSSRQLDVAPPSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDERCAEYKYYEYQLAQEEKALAQTRESQVPRNGGTSTSSSKQTSGHQRSSQQQTSYQIPASALYESADNPRASGSSIQTSPVGMSEPSGSSNADSLALMEFYMKKAAREEKYKQPKHSKDEMPPPASLLGKKGHHMGDFIPPEELEKFLASCNDAAAQKAAKEHVERSKIQADNVGHRLLSKMGWKEGEGLGGSRKGISDPIMAGNIKKNNLGVGAQEPGEVTSEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY	435

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun1g00615	435	MobiDBLite	consensus disorder prediction	122	136	-	-
	Viun1g00615	435	MobiDBLite	consensus disorder prediction	201	276	-	-
	Viun1g00615	435	Pfam	Surp module	146	195	IPR000061	GO:0003723\|GO:0006396
	Viun1g00615	435	Gene3D	Surp module	118	202	IPR035967	GO:0003723\|GO:0006396
	Viun1g00615	435	SMART	surpneu2	145	199	IPR000061	GO:0003723\|GO:0006396
	Viun1g00615	435	MobiDBLite	consensus disorder prediction	23	145	-	-
	Viun1g00615	435	SUPERFAMILY	Surp module (SWAP domain)	131	197	IPR035967	GO:0003723\|GO:0006396
	Viun1g00615	435	SMART	G-patch_5	350	397	IPR000467	GO:0003676
	Viun1g00615	435	ProSiteProfiles	SURP motif repeat profile.	147	190	IPR000061	GO:0003723\|GO:0006396
	Viun1g00615	435	PANTHER	ARGININE/SERINE RICH SPLICING FACTOR SF4/14	2	435	IPR040169	-
	Viun1g00615	435	MobiDBLite	consensus disorder prediction	42	77	-	-
	Viun1g00615	435	Pfam	G-patch domain	353	396	IPR000467	GO:0003676
	Viun1g00615	435	ProSiteProfiles	G-patch domain profile.	352	399	IPR000467	GO:0003676
	Viun1g00615	435	MobiDBLite	consensus disorder prediction	201	275	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun1g00615	Viun-Chr1	5678895	5684904	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun1g00615	349	408	C2H2 Transcription Factor Family	AT5G26610	50.820	3.54e-10	58.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun1g00615	K13096		-	gmx:100786213	799.66