Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00613 ATGAGTGTTATGTATAGTCCTGTTTTCAAGTACTCAGATGTAGAGCTTCAGATAAGGAAAAACCAAGAAATGGATTCAAGTATTGGAAATCCACAACAACACTGTCACCAACCCAATTCTGGATTACTTAAGTATTGTTCTGCTCCAAGTTCATTGCTGGCAAGCCTTGTCGACAACAACATTCTTGACTGTGTCAACGAGGAATCTTTCACAAGTGAGATTCATCAGCATTATGCTCCATCCACAAGTTCAGAAATGAACACCATGTTGTCCAACAATGGATGGAACAATTCAGAAGCTTTGCAAGAATTTGGAAGCAAGCCTGTGAAGCAGGAAATTGGGGAATCTGTTCCACAAGGACCACCACAACAGAATGAATATTCTTATGGTGACTCTCAGTTAATTTACCAATCAGAGCAAATTCAAGGCTTGTCAAATGCTTCTTCCAGTGCTTCTTATGGTGGCTCTTTTGGTGTATTGAACTCCATGGCCTCTGAGAATCCCCTTCAATCTAAAATGGGTGCCAGGAATTGCTCCAATCTTTTCAGGCAAAAGAGTTCCCCTGCTGGATTTTTTTCCATTGAAAATGATCTTGCAGCATTGAGAGAAGTAGGTGGTTTTAAAGGCAATGATGTTTCAAATAGACAGGCTATTACATCTACCAGTGGCTTGAGTAGTTCTCTTGCTTTCTCATCTAGGCCATCTTCAGGCCTGAAACAGATGCCACAAATTGCTGAAGATGGAAAAGAAAGTCTTCAAGAAAATTGTGACCAAAGTAGGATCCTAGTTAATGAAGATGGTGACTCAAAGTTCTACATACCTAGCTTCACCACTGATATCTGGGAAACTTCTTCATTCAATGCCCCCAAAACAGAAAGTGATGATGAAATCATGTTTTCCACTTCAAATGGCTTGGAATCTCAGGAATCAGATTTTAGCTATCAGAATCTTGGTCTGACCCACCATTTGAGCCTACCTACCTCTTCTACTAAGATGTCATCATCCATAGAGAAGTTTCTTGAAGTTCAAGGTTCTGTTCCTTGTAAAATTCGAGCCAAAAGAGGCTTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGTAAGAAGAACAAGAATCAGTGAAAGAATCAAGAAACTGCAAGACCTTTTCCCAAAATCAGAAAAGCAAACAAGCACAGCAGATATGTTAGATTTGGCAGTGGAGTACATTAAGGACCTTCGGCAACAAGTCAAGGTACTCTCAGATTGTAAGGCAAAGTGCAAATGTACAAGTACCGAGAACCATTGCACAAGAACTTGTGCCTGA 1305 0.4061 MSVMYSPVFKYSDVELQIRKNQEMDSSIGNPQQHCHQPNSGLLKYCSAPSSLLASLVDNNILDCVNEESFTSEIHQHYAPSTSSEMNTMLSNNGWNNSEALQEFGSKPVKQEIGESVPQGPPQQNEYSYGDSQLIYQSEQIQGLSNASSSASYGGSFGVLNSMASENPLQSKMGARNCSNLFRQKSSPAGFFSIENDLAALREVGGFKGNDVSNRQAITSTSGLSSSLAFSSRPSSGLKQMPQIAEDGKESLQENCDQSRILVNEDGDSKFYIPSFTTDIWETSSFNAPKTESDDEIMFSTSNGLESQESDFSYQNLGLTHHLSLPTSSTKMSSSIEKFLEVQGSVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQDLFPKSEKQTSTADMLDLAVEYIKDLRQQVKVLSDCKAKCKCTSTENHCTRTCA 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00613 434 Gene3D - 358 428 IPR036638 GO:0046983
Viun1g00613 434 SMART finulus 362 412 IPR011598 GO:0046983
Viun1g00613 434 Pfam Helix-loop-helix DNA-binding domain 362 406 IPR011598 GO:0046983
Viun1g00613 434 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 359 423 IPR036638 GO:0046983
Viun1g00613 434 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 356 406 IPR011598 GO:0046983
Viun1g00613 434 FunFam Transcription factor bHLH130 family 357 426 - -
Viun1g00613 434 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 49 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00613 Viun-Chr1 5660849 5663417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00613 34 412 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 34.264 2.13e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun1g00613 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00613 - - gmx:100812802 671.003