LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun1g00604	ATGGCTCAGAAAACCGAGAACGAAGAAACCGAGTTCAAGGTTCCCGAAACCATTACTCTATGCGTCAACAACTGCGGGGTCACAGGGAACCCTGCCACCAACAACATGTGCCAGAACTGCTTCACCGCCTTCACCGCCTCCACAGCCACAACGTCATCCGCTACCGCCGCCACCGCCGGAGTCTCCTCGCTCTCCGCTAGATCCGCTGCGTCCGCGCGTCCTCAGAAGAGATCCTTCCCCGAAGAGCCTTCCTCGGCTGCAGATCCTCCCTCCTCCGACCAAAACACGCCGTCCGAGGCCAAACGCGTCGTCAACCGCTGCTCCGGTTGCAGGCGGAAGGTCGGACTCACGGGATTCCGGTGCCGGTGTGGCGAACTCTTCTGCGCGGAGCATCGGTACTCCGATCGCCACGACTGCAGTTACGACTACAAAGCCGCCGGTAGAGAAGCCATCGCCAGGGAGAATCCGGTGGTCAGAGCCGCGAAGATCGTCAAAGTCTGA	501	0.6068	MAQKTENEETEFKVPETITLCVNNCGVTGNPATNNMCQNCFTAFTASTATTSSATAATAGVSSLSARSAASARPQKRSFPEEPSSAADPPSSDQNTPSEAKRVVNRCSGCRRKVGLTGFRCRCGELFCAEHRYSDRHDCSYDYKAAGREAIARENPVVRAAKIVKV	166

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun1g00604	166	ProSiteProfiles	Zinc finger AN1-type profile.	101	147	IPR000058	GO:0008270
	Viun1g00604	166	Gene3D	-	95	152	IPR035896	-
	Viun1g00604	166	MobiDBLite	consensus disorder prediction	85	99	-	-
	Viun1g00604	166	SUPERFAMILY	AN1-like Zinc finger	91	160	IPR035896	-
	Viun1g00604	166	Pfam	AN1-like Zinc finger	107	144	IPR000058	GO:0008270
	Viun1g00604	166	ProSiteProfiles	Zinc finger A20-type profile.	15	49	IPR002653	GO:0003677\|GO:0008270
	Viun1g00604	166	MobiDBLite	consensus disorder prediction	58	72	-	-
	Viun1g00604	166	Pfam	A20-like zinc finger	20	41	IPR002653	GO:0003677\|GO:0008270
	Viun1g00604	166	PANTHER	AN1-TYPE ZINC FINGER PROTEIN	19	165	-	-
	Viun1g00604	166	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	20	57	-	-
	Viun1g00604	166	MobiDBLite	consensus disorder prediction	58	99	-	-
	Viun1g00604	166	FunFam	Zinc finger AN1-type containing 6	81	162	-	-
	Viun1g00604	166	Gene3D	-	1	94	-	-
	Viun1g00604	166	FunFam	Zinc finger A20 and AN1 domain-containing stress-associated protein 1	1	102	-	-
	Viun1g00604	166	SMART	A20_3	18	42	IPR002653	GO:0003677\|GO:0008270
	Viun1g00604	166	SMART	AN1_Zf_4	107	144	IPR000058	GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun1g00604	Viun-Chr1	5532825	5533934	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun1g00604	8	166	C2H2 Transcription Factor Family	AT3G52800	37.791	3.55e-36	121

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun1g00604	-		-	vum:124827556	288.5