Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00560 ATGGCTAAGAAGGGTTGGTTAAGCATGATTAAGAAGCTCTTTTTATGGGGGGCACAGTCCTCACAAAGTAAGAAGGAAAAAAGAAGGGTTTGGATATTTGGGAGGGTTAAGGCCAAGAGGTTGCCTTCAATTACAGCACCACCACCCTCAAAAGAAACAAGACTCAGTGAGGCTGAAGATGAACACAGCAAGCATGCTTTAACAGTGGCCATTGCTTCAGCTGCTGCTGCTGAAGCTGCTATCACTGCTGCTCAGGTTGCTGTTGAGGTTGTCAGGCTCCAATCTGCTCATCAACAACACAATGAAAAGCAAGAACAGCTTCAACCTGTTAAAACCGGACATCATGCTCCTCATTCCACACACCACTGCCAGAGGAAGATGGAAGAAGCTTCAGCCATCAGAATTCAAACAGCATTCAGAGGTTACCTATCAAGGAAAGCTCTGAGAGCATTGAAGGGAATAGTGAAACTACAAGCTATCATTCGTGGAAGAGCTGTGAGACGACAAGCTTTGTGCACTCTGAAGTGCTTGGAGTCCTTAGTGAGTATCCAGTCACATATGTTTGCAAGGAGACTTCAAATGGTTGAAGGAAGATGGGATTGTGGTGAACATGAAGAAGATATGGAAGGTTCAAGAGACATGATAATAAGGATGGACTCAAACAGTGAGAGAAGGTGGGATGACAGCATTCTGTTGAAGGAAGAGGTAGATGCCTCTTGCATGAGCAAGAAAGAAGCAGTTGTTAAGAGAGAAAGAGTAAAAGAATACTCCTTTAACCACAGAAAGTCAGCAGAATCAGAAAGAGGTAAAATAAATGGAAGATGGAGATACTGGATGGAGCAGTGGGTAGACACACAACTTTCCAAGAGTAAAGAACTTGAAGATTTAGTCTCAGTTTTCAGCTCACATCACTCTAAACCTGGAGAAGAAAATGGAAGGAGACAACTAAAACTCAGAAATACTGAGAGACAGAATCAGGTTGAAGGATTAGATTCTCCAGCAGTTTCTTCAAGGAACACATTTCCTCATAGGAGCCAGATTTCAGAGGCAGAAGATCACACATTCCCAAACTCACCTTCAATTCCTACATACATGGCTGCAACAAAATCAACACAAGCAAAAGCAAGATCAACAAGCTCCCCAAGAGCAAGGTTAGGAGGGAATTTTGACATGAACTCTGATACCTATTCACCATGCAAGAAAAAGTTACCACTTGTGTCTTCTATTAATCAGCAAAGATCTCCTAGCTTAAAGGGTCTTCCTAGACCTCTGAAGTTAAGTCAGACATTGAGGGATCTCAGCATTAACTCAGATTGCTCTGTGCCAAATTGA 1332 0.4264 MAKKGWLSMIKKLFLWGAQSSQSKKEKRRVWIFGRVKAKRLPSITAPPPSKETRLSEAEDEHSKHALTVAIASAAAAEAAITAAQVAVEVVRLQSAHQQHNEKQEQLQPVKTGHHAPHSTHHCQRKMEEASAIRIQTAFRGYLSRKALRALKGIVKLQAIIRGRAVRRQALCTLKCLESLVSIQSHMFARRLQMVEGRWDCGEHEEDMEGSRDMIIRMDSNSERRWDDSILLKEEVDASCMSKKEAVVKRERVKEYSFNHRKSAESERGKINGRWRYWMEQWVDTQLSKSKELEDLVSVFSSHHSKPGEENGRRQLKLRNTERQNQVEGLDSPAVSSRNTFPHRSQISEAEDHTFPNSPSIPTYMAATKSTQAKARSTSSPRARLGGNFDMNSDTYSPCKKKLPLVSSINQQRSPSLKGLPRPLKLSQTLRDLSINSDCSVPN 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00560 443 ProSiteProfiles IQ motif profile. 152 179 IPR000048 GO:0005515
Viun1g00560 443 ProSiteProfiles IQ motif profile. 128 156 IPR000048 GO:0005515
Viun1g00560 443 MobiDBLite consensus disorder prediction 301 397 - -
Viun1g00560 443 MobiDBLite consensus disorder prediction 42 61 - -
Viun1g00560 443 MobiDBLite consensus disorder prediction 306 321 - -
Viun1g00560 443 Pfam Protein of unknown function (DUF4005) 349 406 IPR025064 -
Viun1g00560 443 MobiDBLite consensus disorder prediction 322 344 - -
Viun1g00560 443 Pfam IQ calmodulin-binding motif 130 149 IPR000048 GO:0005515
Viun1g00560 443 SMART iq_5 127 149 IPR000048 GO:0005515
Viun1g00560 443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 171 IPR027417 -
Viun1g00560 443 Gene3D - 126 179 - -
Viun1g00560 443 MobiDBLite consensus disorder prediction 97 121 - -
Viun1g00560 443 MobiDBLite consensus disorder prediction 351 395 - -
Viun1g00560 443 PANTHER IQ-DOMAIN 5-RELATED 1 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00560 Viun-Chr1 4752612 4755738 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00560 3 443 IQD Protein Family AT5G13460 42.283 4.20e-94 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00560 - - gmx:100794802 677.167