Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00544 ATGGACTCAGGTTCACCATGCCAGTGGTTGAGGGAGTTGAGATTGGATTCCCAGGGATTAAATCCAATAAGCCTTCTTATTGACTGTGCCAAATGTGTTGCATCAGGAAGCATCAAGAATGCAGATATTGGGCTTGAGTACATATCTCAGATTTCATCTCCTGATGGCAATGCAGTGCAAAGAATGGTGAGTTATTTCAGTGTAGCACTTGCACACAGGATAATAAAACATTTACCAGGTGTGTATAAATCTATCAGTCCCTCAAAAACATCACTCTCTCAAGACGATATCCTTGCTGAGAAATGCTTCTACGAGCTGTGTCCCTTTTTGAAGTTCTCATACCTCATCACAAACCAAGCCATTGTGGAGGCAATGGAATGTGAAAAAGTGGTTCACATCATTGATCTTCATTGTTGTGAGCCAGCTCAATGGATAGATCTTCTACTCACTTTCAAAAACCGTCGTGGAGGTCCACCCCATCTGAAAATCACAGGCATCAATGAATCGAAAGAAGTGTTGGAGCAGGTGAACTTTCATGTGACATCAGAAGCTGGGAAGTTGGATTTTCCTTTGCAGTTCTACCCAGTTGTTAGCAAAGTGGAAGATGTTGACTTTGAGAAGTTACCTGTTAAAACTGGAGATGCAGTTGCAATAACTTCTGTTCTTCAGCTGCATCTGCTTCTTTCCACTGATGATGACATGGGTGGAAGAATCTCACCAGCAGTGGCAGCAGCATCCATGAATCTGCAGAGAGCAGTGCATTTGGGCCAAAGGACTTTTGCAGAGTGGCTTGAGAGAGATATGATCAATGCATATATATTGAGTCCTGATTCTGCATTGTCGCCTCTTTCCTTTGGTGCCTCACCTAAGATGGGGAATCTTCTGAAGGCCATGAGAAAGCTGAATCCAAAACTTTTAGTGGTGACTGAGCAAGAATCAAATATGAATGGATCAAATTTGATGGAGAGAGTTGATAGAGCATTGTACTTTTACAGTGCATTGTTTGACTGCTTGGACTCCACTGTGATGAGAACTTCAGTTGAGAGGCAAAAACTTGAGAGGATGCTTTTTGGAGAGCAGATAAAAAATATCATTGCTTGTGAGGGAGTTGAGAGAAAGGAAAGACATGAGAAACTTGAAAAATGGATTCCAAGGCTTGAAATGGCTGGTTTTGTGAAGGTGCCATTGAGCTACAATGGGAGGATTGAAGCAAAGAATCTGTTGCAGAGATATAGTAATAAATACAAATTTAGAGAAGAGAATGATTGTTTGCTTGTTTGCTGGAGCGATAGACCATTGTTTTCAGTATCTGCTTGGAGTTTTAGGAGATGA 1332 0.4152 MDSGSPCQWLRELRLDSQGLNPISLLIDCAKCVASGSIKNADIGLEYISQISSPDGNAVQRMVSYFSVALAHRIIKHLPGVYKSISPSKTSLSQDDILAEKCFYELCPFLKFSYLITNQAIVEAMECEKVVHIIDLHCCEPAQWIDLLLTFKNRRGGPPHLKITGINESKEVLEQVNFHVTSEAGKLDFPLQFYPVVSKVEDVDFEKLPVKTGDAVAITSVLQLHLLLSTDDDMGGRISPAVAAASMNLQRAVHLGQRTFAEWLERDMINAYILSPDSALSPLSFGASPKMGNLLKAMRKLNPKLLVVTEQESNMNGSNLMERVDRALYFYSALFDCLDSTVMRTSVERQKLERMLFGEQIKNIIACEGVERKERHEKLEKWIPRLEMAGFVKVPLSYNGRIEAKNLLQRYSNKYKFREENDCLLVCWSDRPLFSVSAWSFRR 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00544 443 Pfam GRAS domain family 23 439 IPR005202 -
Viun1g00544 443 ProSiteProfiles GRAS family profile. 13 440 IPR005202 -
Viun1g00544 443 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 19 436 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00544 Viun-Chr1 4621338 4623346 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00544 1 443 GRAS Transcription Factor Family AT1G50420 48.667 4.10e-148 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun1g00544 GRAS 3e-116 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00544 - - vum:124842506 840.876