Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00543 ATGAATGGGGAAGATAGGGATAAATACCTGGCCCGTATTCTTAATGCATGTGCCAAGTTTATTGAATCAGGAAGCATCATGAATGCAGATACTGGACTGGACTATATTGCTCACATTGCATCCCCTTATGGTGATGCAATGCAAAGGGTAGCCACCTATGTTAGTGAGGGTTTAGCTTTCCAAGTTCTGAAAAATTTGCAGGGAGTACCTAAAGCTGTCAATTTGTCAAAGACAATGTCAACCTCGGAAGAACAACTTGTCAAGAAGACATTCTATGACCTGTATCCATTTTTAAAGACTGCATATGTAATCACAAGTCATGCCATTGCTGAAGCTGTTGAAGGAGAAGAAGTGATCCATGTCATTGATCTCTGTGCATCTGATGCTGCTCAGTGGATTTATCTTATGCATAGATTAAAAGAAAGCCTGAGGAGCCCCTCAGTTCTGAAAATCACAGGCATACATGAGAAGAGGGAAATTCTAGAGCAAGTGGACACTCAACTAAGAGTAGAAGCTAAAAGTTTAAACTTCAAACTCGAATTCAATGCTATTGTAAGCAGTTTGGAGAATCTCGACCTTGAAGAATTGCCTGTGCAGAAAGGAGAGGCTCTTGCAATCAGCTCAGTGCTTCAGCTGCACACTCTTCTGGCCACTGATGATGCAGTGGTCTGCATCAGGAGCTCGCAGGAAGAACCAATGCATCAAAGGACATTTGCTGAGATGCTTGGGAAACAAAAGACCTACCCCAGTTCTGAATCATCGTTGTTACAACTTCCTCTGTGTTCTACTTCAACCAAGATGATGCACTTTCTAAAGGGCCTGTGGAAACTCCAACCTAGAGTGATGGTGGTTACTGAACAAGAATCCAATGTGAATGGCTCTTTGACAGAAAGGGTTGACAAAGCATTGGACTTTTACGGTGCATTGTTCAACTGTTTGGAATCAACTGTTTCAACAACACTAGTACAGAGAAACATCATGGAAAGGACTCTACTGGGGCAAGAAATAAAGAACATTGTTGCAGGTGAAGGAGTTGAGAGAAAGGAGAGGCATGAGAAACTTGAGACTTGGATCCCAAAGCTAGAAATGGCCGGGTTTGGGAAGAGACATATCAGCCATCATGGGATCATGCAAGCATCAAAACAGTTGCATGGATATGGAAATGGATACAGACTCTGTCCAGAGAATAATTGTTTGTTTGTATGCTGGAATGATAAACCTCTCTTTTCTGTGTCAGCATGGACAGTTCAGAAGATGAATAACATGGTTATGTAA 1275 0.4196 MNGEDRDKYLARILNACAKFIESGSIMNADTGLDYIAHIASPYGDAMQRVATYVSEGLAFQVLKNLQGVPKAVNLSKTMSTSEEQLVKKTFYDLYPFLKTAYVITSHAIAEAVEGEEVIHVIDLCASDAAQWIYLMHRLKESLRSPSVLKITGIHEKREILEQVDTQLRVEAKSLNFKLEFNAIVSSLENLDLEELPVQKGEALAISSVLQLHTLLATDDAVVCIRSSQEEPMHQRTFAEMLGKQKTYPSSESSLLQLPLCSTSTKMMHFLKGLWKLQPRVMVVTEQESNVNGSLTERVDKALDFYGALFNCLESTVSTTLVQRNIMERTLLGQEIKNIVAGEGVERKERHEKLETWIPKLEMAGFGKRHISHHGIMQASKQLHGYGNGYRLCPENNCLFVCWNDKPLFSVSAWTVQKMNNMVM 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00543 424 Pfam GRAS domain family 11 415 IPR005202 -
Viun1g00543 424 ProSiteProfiles GRAS family profile. 1 415 IPR005202 -
Viun1g00543 424 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 11 411 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00543 Viun-Chr1 4618056 4619330 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00543 4 418 GRAS Transcription Factor Family AT1G50420 43.478 3.10e-119 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun1g00543 GRAS 2e-98 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00543 - - vra:106778126 410.609