Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00540 ATGGGTTCTAACTGTGGTGAAGAAAATGATCCATGCCTTTCTGCCATGCTACTAAGTTTCAGCCCAATGGTTTACACTGCTGTGTTGAATGCTGCCATTGAGCTCAACTTGTTTGATATCATTGCTAAAACAACAACAAAAGCCCCATTTGGTGTTTCAGCTTCAGAGATTGCTTCTCGACTCCCAATTCAGCACAAAAAACTACCTCAAAGGCTTGATCGCATGTTGTCTCTTCTTGCAAGTCACTCTCTTCTCACTTGCTCCACACGCACAAATCAAGATGGTAAGGTCCAAAGACTCTTTCAGCTTTCACCTTCCGGAAAGTACTTCACCAATGCAGAAGCCACTGCTTCTTTGGCCTTGTTCACAACGTTTATGAATCATCCAAACCTTGTTAAGGCATTCCTTAATTTCAAGGAGATAGTTCTTGACTGTGATAATGGCCTATACATGAAAGTTCATGGAATGCCTATTTTTGAAGGCATACAATCTGATCCAGCATGGAATCATATCTTCAATGAAGCAATGGCCAATATCTGCACAACAGAAATGAGAAAGATACTTGAAATATACAGTGGATTTGAAGGAATATCACTGCTTATTGATGTGGGAGGAGGAGTAGGGCAAAGTTTGAACATCATAATCTCTAAGTATCCTTCCATAAAGGGTGTCAATTTTGATCTTCCACAAGTAATACAACAAGCTCCACCTTATCCAGGAATTGAACATGTTGAAGGAGACATGTTTGAAAGTGTTCCAAAAGGTGATGCCATACTACTGAAGGGCATATTGCACAATTGGTCGGATGAAAATTGTTTGAAAATTCTGAATAATTGCTACAAAGCTTTGCCAGAAAATGGAAAGGTGGTTGTTGTAGATTTCATAATGCCTGAAGCAATTGGTTCTTCTGAAGCAGATAAGATGGTTACTAGCTTTGATAACCTGATGTTTCTTGATGGAGGAAGTGAAAGAACTGAGAAAGAGTTTATGAATTTATGCCAAATTTCTGAGTTTTCTTCTTTCAGAGTTGTTTCTCGTGCCTTTACTGCTCTAGGAGTAATGGAATTTTATAAATAA 1077 0.3872 MGSNCGEENDPCLSAMLLSFSPMVYTAVLNAAIELNLFDIIAKTTTKAPFGVSASEIASRLPIQHKKLPQRLDRMLSLLASHSLLTCSTRTNQDGKVQRLFQLSPSGKYFTNAEATASLALFTTFMNHPNLVKAFLNFKEIVLDCDNGLYMKVHGMPIFEGIQSDPAWNHIFNEAMANICTTEMRKILEIYSGFEGISLLIDVGGGVGQSLNIIISKYPSIKGVNFDLPQVIQQAPPYPGIEHVEGDMFESVPKGDAILLKGILHNWSDENCLKILNNCYKALPENGKVVVVDFIMPEAIGSSEADKMVTSFDNLMFLDGGSERTEKEFMNLCQISEFSSFRVVSRAFTALGVMEFYK 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00540 358 SUPERFAMILY "Winged helix" DNA-binding domain 8 112 IPR036390 -
Viun1g00540 358 PANTHER O-METHYLTRANSFERASE 26 348 IPR016461 GO:0008168
Viun1g00540 358 Gene3D Vaccinia Virus protein VP39 169 346 IPR029063 -
Viun1g00540 358 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 119 347 IPR029063 -
Viun1g00540 358 FunFam Caffeic acid 3-O-methyltransferase 1 110 - -
Viun1g00540 358 Gene3D - 24 187 IPR036388 -
Viun1g00540 358 Pfam Dimerisation domain 28 80 IPR012967 GO:0046983
Viun1g00540 358 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 358 IPR016461 GO:0008168
Viun1g00540 358 Pfam O-methyltransferase domain 138 336 IPR001077 GO:0008171
Viun1g00540 358 PIRSF O-mtase 3 358 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00540 Viun-Chr1 4596975 4598345 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00540 8 348 Monolignol Biosynthesis Gene Families AT5G54160 46.221 1.12e-101 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00540 - - gmx:100784030 590.497