Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00508 ATGGAGAGCCAACAAATTCTCATGCTAATCATTTACACTACTTTCTTTTGTTTCATGCCCACTTCCTCTACTATCACCCCAAATCAGTCCTTACAATACCATGAAACCCTTGTTTCTTCTGCAGGAACCTTTGAAGCAGGGTTTTTTGACTTTGGAAACTCAAGAAGACAATATTTTGGTATATGGTACAAGAGCATATTACCTAGGACTATTGTGTGGGTTGCCAACAGGAATGTCCCAGCACAAAACTCAACAGCAGTTCTGAAACTTACTCATCAAGGAGATCTTGTCATTCTTGATGGCTCCGGAGGCAGAGTGTGGTCCTCCAACTCATCAAAAATTGCAGTGAAACCAGTTGTGCAGCTTTTAGATTCAGGAAACCTTGTTGTGAAAGATGGAGAGAGCTCAGAGAACTTCTTGTGGGAAAGCTTTGATTATCCTGGAGACACTTTCCTTGCAGGGATGAAACTGAAAAGTGATTTTGTTACTGGTCCATATCAGTATCTCACGTCTTGGAGGGACAATGAAGATCCAGCTGAAGGTGAGTTTTATTATAAGATCGATACAAGGGGCTTTCCTCAACAAGTTACTACAAACGGAACTACAATTTTGTATAGCACAGGGCCTTGGAATGGCTATCTTTTCAGTGGTGTTTCTTGGGACAGAATGCACAGATTCTTGAATTTCTCTTTTGAGTTCACTAACAAAGGGGTTACTTATGGATGTGAAACGTTAAACAGTTCAGTTCTTAGTAGAACAATACTCAAGCTCAATCCAAGAGGGGGTACAGAGCGTTTTCTATGGTCAAACCAAAGACAAAGTTGGGATATTGTAAACAGTCATCCAATAGATCAGTGTGAATATTTTGCCACTTGTGGTGTCAACTCTATCTGCAATATTAATAAGCTTCCAATATGTGAATGCTTGCAAGGTTTCACACCAAAGTTTCAAGCAAAGTGGGATTCTCATGATTGGTCTGGTGGTTGTGTGAGAAGAACAAAGTTAAGTTGTGATAATGGAGATTGGTTTAAGGAGTACAGAGGAATAAAGTTGCCAGAAACGTCTTCTTCCTGGTTTGACAGGAGCTTGAGCCTTGAGGAATGTGAGACATTGTGTTTCAGAAACTGCTCTTGTACTGCATATGCAAATTCAGATATTAGAGATGGTGGGAGTGGTTGCTTGCTTTGGTTCCGTGACCTTTTGGACCTGAGAACTCACACCGATCGAGGGCAAGAAATTCATATACGAATGCCATTCTCTGAACATCAAAGAAGGAATAAGAGGGACCTAAGTCCAAAGAGACTTGCAGGGATTATAGTAGGACTTGTTACATTCATAGTTGGACTAACAATTCTTGTGTGGGCAACTTCAAAACATATAAAAGGTATGAAGCTACCCAAGCCAGTGAAAAAATCTATTCCTTGGAAGCACATGATGGACAAGGAAGGCAACAACTTACCAACGATGTTTAATTTTTCAACCATTGATATTGCCACAAATCATTTTTCTAACAGAAACAAGTTAGGAGAAGGTGGTTTCGGAACAGTACACAAGGGAACGTTGATAGATGGACAAGAGATTGCGGTTAAGAGACTTTCAAAAACTTCGAGACAGGGAACTGAGGAGTTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAACACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACAAGATGAGAAGTTGTTGATCTATGAATTCATGCCCAACAGAAGTTTGGATTACTTTATTTTTGATACATTGCAAGGCAAATCCCTAGATTGGACTAAACGGTTGAAAATTATCGACGGAATTGCTCGGGGTCTTATGTATCTTCATCAAGACTCTAGACTAAGAATAATACATAGAGACATCAAAACAAGTAACATTCTTCTTGATGACAATATGATTCCAAAGATATCAGACTTTGGATTAGCAAGAATATTTGGAGCAGATCAAGCTGAAGCAAATACAAACAGAGTGATGGGAACACATGGCTATATGCCTCCAGAATATGCAGGGCATGGTTGTTTCTCAACCAAATCTGATGTTTTCAGTTTTGGAGTAATTGTTATTGAGATAATTAGTGGAAGGAAGAATCGTGGATTTCGTGACCCTCACCATCATCTTCTCAACCTTCTTGGCCATGCGTGGAGATTATGGAATGAAGAAAGGCCATTGGAGTTAATGGATGAGATATTAGATGATGGTGCAGACTTATCTTTAGAAATATTACGGTGTATTCATGTGGGTCTGTTGTGTGTACAACAGAATCCAGAAAATAGGCCTAATATGTCATCTGTTGTTTTGATGTTAAATGGTGACAAATTACTACCAAAACCAGGCCAACCTGGATTCTATATAGGAAAAGATAATATAGCTGACACTGGATCTTCAAAGCAACATGAAAGGTGTTCAATAAATGAAGTTTCAATTTCATCCTTAGAGGCGCGATAG 2466 0.3913 MESQQILMLIIYTTFFCFMPTSSTITPNQSLQYHETLVSSAGTFEAGFFDFGNSRRQYFGIWYKSILPRTIVWVANRNVPAQNSTAVLKLTHQGDLVILDGSGGRVWSSNSSKIAVKPVVQLLDSGNLVVKDGESSENFLWESFDYPGDTFLAGMKLKSDFVTGPYQYLTSWRDNEDPAEGEFYYKIDTRGFPQQVTTNGTTILYSTGPWNGYLFSGVSWDRMHRFLNFSFEFTNKGVTYGCETLNSSVLSRTILKLNPRGGTERFLWSNQRQSWDIVNSHPIDQCEYFATCGVNSICNINKLPICECLQGFTPKFQAKWDSHDWSGGCVRRTKLSCDNGDWFKEYRGIKLPETSSSWFDRSLSLEECETLCFRNCSCTAYANSDIRDGGSGCLLWFRDLLDLRTHTDRGQEIHIRMPFSEHQRRNKRDLSPKRLAGIIVGLVTFIVGLTILVWATSKHIKGMKLPKPVKKSIPWKHMMDKEGNNLPTMFNFSTIDIATNHFSNRNKLGEGGFGTVHKGTLIDGQEIAVKRLSKTSRQGTEEFKNEVKLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDYFIFDTLQGKSLDWTKRLKIIDGIARGLMYLHQDSRLRIIHRDIKTSNILLDDNMIPKISDFGLARIFGADQAEANTNRVMGTHGYMPPEYAGHGCFSTKSDVFSFGVIVIEIISGRKNRGFRDPHHHLLNLLGHAWRLWNEERPLELMDEILDDGADLSLEILRCIHVGLLCVQQNPENRPNMSSVVLMLNGDKLLPKPGQPGFYIGKDNIADTGSSKQHERCSINEVSISSLEAR 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00508 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 336 417 - -
Viun1g00508 821 Pfam D-mannose binding lectin 70 173 IPR001480 -
Viun1g00508 821 Pfam PAN-like domain 337 403 IPR003609 -
Viun1g00508 821 Pfam S-locus glycoprotein domain 205 316 IPR000858 GO:0048544
Viun1g00508 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Viun1g00508 821 ProSiteProfiles PAN/Apple domain profile. 337 418 IPR003609 -
Viun1g00508 821 ProSiteProfiles Bulb-type lectin domain profile. 22 143 IPR001480 -
Viun1g00508 821 ProSiteProfiles Protein kinase domain profile. 502 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00508 821 Gene3D - 17 144 IPR036426 -
Viun1g00508 821 CDD STKc_IRAK 508 777 - -
Viun1g00508 821 SMART blect_4 28 147 IPR001480 -
Viun1g00508 821 CDD PAN_AP_plant 333 418 - -
Viun1g00508 821 SUPERFAMILY Protein kinase-like (PK-like) 483 775 IPR011009 -
Viun1g00508 821 Gene3D Phosphorylase Kinase; domain 1 476 577 - -
Viun1g00508 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 212 IPR036426 -
Viun1g00508 821 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 766 - -
Viun1g00508 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 469 577 - -
Viun1g00508 821 Pfam Domain of unknown function (DUF3403) 781 821 IPR021820 GO:0004674
Viun1g00508 821 SMART serkin_6 502 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00508 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 578 783 - -
Viun1g00508 821 PIRSF SRK 2 821 IPR024171 GO:0004674
Viun1g00508 821 Pfam Protein tyrosine and serine/threonine kinase 505 772 IPR001245 GO:0004672|GO:0006468
Viun1g00508 821 Gene3D Transferase(Phosphotransferase) domain 1 578 780 - -
Viun1g00508 821 ProSitePatterns Protein kinases ATP-binding region signature. 508 530 IPR017441 GO:0005524
Viun1g00508 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 144 - -
Viun1g00508 821 CDD B_lectin 28 147 IPR001480 -
Viun1g00508 821 SMART ntp_6 338 417 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00508 Viun-Chr1 4269451 4277740 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00508 442 789 Receptor kinase-like Gene Family AT4G23230 55.932 5.95e-121 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun1g00508 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00508 - - gmx:100819820 1266.91