Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00506 ATGGAGAGCCAACAAATTCTCATGCTAATCATTTACACTACTTTCTTTTGTTTCATGCCCACTTCCTCTACTATCACCCCAAATCAGTCCTTACAATATCATGAGACACTTGTTTCTTCTGCAGGAACCTTTGAAGCAGGATTTTTTGGCTTTGAAAACTCAACAAGACAATATTTTGGTATATGGTACAAGAGCATACTACCTAGGACTATTGTGTGGGTTGCCAACAGGAATGTCCCAGCACAAAACTCAACAGCAGTTCTGAAACTTACTCATCAAGGAGTTATTGTCATTCTTGATGGCTCTGGAGGAAGATTGTGGTTCTCCAACTCATCAAAAATTGCAGTGAAACCAGTTATGCAGCTGTTAGATTCAGGAAACCTTGTTGTGAAAGATGGAGAGAGCTCAGAGAATTTCTTGTGGCAAAGCTTTGATTATCCTGGAGACACTTTCCTTCCAGGAATGAAACTGAAAAGCGATTTTCTTAAGGGTCCATATAAGTATCTCACTTCTTGGAGGGACTATGACGATCCATCTGAAGATGTGTTTTCTTATATGATCGATACGAGGGGCTTTCCTCAACAAGTTACTACAAACGGAACTACAATTTTGTACAGCATAGGGCCTTGGAATGGCTATATTTTCAGTGGTGTTTCTTGGGATAGAACCCACACATTCTTGAGTTTCTCTTTAGAATTCACTGACGAAGGGGTTTCGTATGGATATGAAACGTTAAACATTTCAGTGCTTAGTATAACAAGGCTCAAGCTCAATCCAAGAGGGGGTACAGAGCGTTTTCTATGGTCAAACCAAAGACAAAGTTGGGATATTGTAAACAGTCATCCAATAGATCAGTGTGAATATTTTGGCACTTGTGGTGTCAACTCTATATGCAATATTAATAAGCCTCCAATATGTGAATGCTTGCAAGGTTTCACACCAAAGTTTCAAGCAAAGTGGGATTCTCATGATTGGTCTGGTGGTTGTGTGAGAAGAACAAAGTTAAGTTGTGATAATGGAGATTGGTTTAAGGAGTACAGAGGAATAAAGTTGCCAGAAACGTCTTCTTCCTGGTTTGACAGGAGCTTGAGCCTTGAGGAATGTGAGACATTGTGTTTCAGAAACTGCTCTTGTACTGCATATGCAAATTCAGATATTAGAGATGGTGGGAGTGGTTGCTTGCTTTGGTTCCGTGACATTGTGGACCTGAGAACTCACACTGATCAAGGGCAAGAAATTCATATACGAATGCCATTCTCTGAACGTGGTATTTTCATTTCCAATTCCATCTTATGCCCTTTTGCCAGATTTGGTGGAAATATCATTTATAAATATAATGTTATTTATAAGCAATTCATGTCTCCTACTACATTGGGAGCAGTGAAAAAAGTTATTCCCTGGAAGCACATGATGGAGAAGGAAGACAACAACTTACCAACAATGTTTCGTTTTTCAACCATTGATATTGCAACAAATCATTTTTCTAACAGAAACAAGGTAGGAGAAGGTGGTTTTGGAACAGTACACAAGGGAACGTTGATAGATGGGCAAGAGATTGCAGTTAAGAGACTTTCAAAAACTTCAACACAGGGAACTGAGGAGTTCAAAAATGAAGTTAAGTTGATGGCAACACTTCAGCACCGTAATCTTGTAAAACTTCTTGGTTGGTCTATTAAAAAAGATGAGAAGTTGTTGATCTATGAATTCATGCCCAACAGAAGCTTGGATTACTTTATTTTTGATACATTGCAAGGCAAATCATTAGATTGGACTAAGCGGTTGAAAATTGTCGAGGGAATTGCTCGGGGTCTTATGTATCTTCATCAAGATTCTAGACTTAGAATAATACATAGAGACATCAAAACAAGTAACATTCTTCTTGATGACAATATGATTCCAAAGATATCAGATTTTGGATTAGCAAGAATATTTGGAGCAGATCAAGCTGAAGCAAATACAAACAGAGTGATGGGAACACATGGCTATATGCCTCCAGAATATGCAGGGCATGGTTGTTTCTCAACCAAATCTGATGTTTTCAGTTTTGGAGTAATTGTTATTGAGATAATTAGTGGAAGGAAGAATCGTGGATTTCGTGACCCTCACCATCATCTTCTCAACCTTCTTGGCCATGCGTGGAGATTATGGAATGAAGAAAGGCCATTGGAGTTAATGGATGAGATATTAGATGATGGTGCAGACTTATCTTTAGAAATATTACGGTGTATTCATGTGGGTCTGTTGTGTGTACAACAGAATCCAGAAAATAGGCCTAATATGTCATCTGTTGTTTTGATGTTAAATGGTGAGAAGTTGCTACCGAGACCAAGCCAACCTGGATTCTATATAGGAAAAGATCATATAGCTGACACTGGATCTTCAAAGCAACATGACAGGTGTTCAATAAATGAAGTTTCAATTTCATCCTTAGAGGCGCGATAG 2442 0.3862 MESQQILMLIIYTTFFCFMPTSSTITPNQSLQYHETLVSSAGTFEAGFFGFENSTRQYFGIWYKSILPRTIVWVANRNVPAQNSTAVLKLTHQGVIVILDGSGGRLWFSNSSKIAVKPVMQLLDSGNLVVKDGESSENFLWQSFDYPGDTFLPGMKLKSDFLKGPYKYLTSWRDYDDPSEDVFSYMIDTRGFPQQVTTNGTTILYSIGPWNGYIFSGVSWDRTHTFLSFSLEFTDEGVSYGYETLNISVLSITRLKLNPRGGTERFLWSNQRQSWDIVNSHPIDQCEYFGTCGVNSICNINKPPICECLQGFTPKFQAKWDSHDWSGGCVRRTKLSCDNGDWFKEYRGIKLPETSSSWFDRSLSLEECETLCFRNCSCTAYANSDIRDGGSGCLLWFRDIVDLRTHTDQGQEIHIRMPFSERGIFISNSILCPFARFGGNIIYKYNVIYKQFMSPTTLGAVKKVIPWKHMMEKEDNNLPTMFRFSTIDIATNHFSNRNKVGEGGFGTVHKGTLIDGQEIAVKRLSKTSTQGTEEFKNEVKLMATLQHRNLVKLLGWSIKKDEKLLIYEFMPNRSLDYFIFDTLQGKSLDWTKRLKIVEGIARGLMYLHQDSRLRIIHRDIKTSNILLDDNMIPKISDFGLARIFGADQAEANTNRVMGTHGYMPPEYAGHGCFSTKSDVFSFGVIVIEIISGRKNRGFRDPHHHLLNLLGHAWRLWNEERPLELMDEILDDGADLSLEILRCIHVGLLCVQQNPENRPNMSSVVLMLNGEKLLPRPSQPGFYIGKDHIADTGSSKQHDRCSINEVSISSLEAR 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00506 813 Pfam Protein tyrosine and serine/threonine kinase 497 764 IPR001245 GO:0004672|GO:0006468
Viun1g00506 813 SMART serkin_6 494 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00506 813 Pfam D-mannose binding lectin 70 173 IPR001480 -
Viun1g00506 813 Gene3D - 17 144 IPR036426 -
Viun1g00506 813 CDD STKc_IRAK 500 769 - -
Viun1g00506 813 SMART ntp_6 338 417 IPR003609 -
Viun1g00506 813 ProSiteProfiles PAN/Apple domain profile. 337 418 IPR003609 -
Viun1g00506 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 460 569 - -
Viun1g00506 813 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 758 - -
Viun1g00506 813 CDD PAN_AP_plant 333 418 - -
Viun1g00506 813 Pfam PAN-like domain 337 403 IPR003609 -
Viun1g00506 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 570 775 - -
Viun1g00506 813 Pfam S-locus glycoprotein domain 205 316 IPR000858 GO:0048544
Viun1g00506 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 144 - -
Viun1g00506 813 Pfam Domain of unknown function (DUF3403) 773 813 IPR021820 GO:0004674
Viun1g00506 813 PIRSF SRK 2 813 IPR024171 GO:0004674
Viun1g00506 813 Gene3D Transferase(Phosphotransferase) domain 1 570 773 - -
Viun1g00506 813 Gene3D Phosphorylase Kinase; domain 1 467 569 - -
Viun1g00506 813 SUPERFAMILY Protein kinase-like (PK-like) 476 767 IPR011009 -
Viun1g00506 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Viun1g00506 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 336 417 - -
Viun1g00506 813 SMART blect_4 28 147 IPR001480 -
Viun1g00506 813 ProSiteProfiles Protein kinase domain profile. 494 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun1g00506 813 CDD B_lectin 28 147 IPR001480 -
Viun1g00506 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 178 IPR036426 -
Viun1g00506 813 ProSitePatterns Protein kinases ATP-binding region signature. 500 522 IPR017441 GO:0005524
Viun1g00506 813 ProSiteProfiles Bulb-type lectin domain profile. 22 143 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00506 Viun-Chr1 4074312 4077901 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00506 482 783 Receptor kinase-like Gene Family AT4G05200 57.426 2.25e-119 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun1g00506 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00506 - - gmx:100819820 1167.91