Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00504 ATGGAAATGGTGGAAAAGAGAAAATTTTCTAAACTGTTGTCGGAGCTGATAGTTTTGGCCGATGAGGTTGCTTCTCTGGCTAAGAACTCTGAAATTGAGGTCCATATATTTGCTGAGTTTGCCATGTTGGTTGAGAAATTCTCACCAATCTTCATCGACTTGAGAGACAAAAACACAGTCTTGGACAAGCCACCTATAAGAAAATCCTTGGAATCTCTTGAGAATGAGCTGAGGCGTGCCAAAGCTTTGACAAAAAGCTCGAATTTGAGGCAACCCATCAAGCAAATTGAGGACATAACACATGACATAGGTCGATCCTTTGGCCTTCTGCTCGTAGCCAGCTTAGAAATTTCCGTGGATTTCAGAGAAAAGATTGGTACATTGCAAAGACAATTGATGAATGTGAGATTTGATGGCAGTTTAAGTGTAGCTTCAAGTCCAAAATCAGAGGCTTCCAGCAGTGAAGTGAAGCTCACTGCAGAAATAGAAGAGGAAATAGTTAATGTTTCTATTGATGATGTTGTTCTACAACTTAAGAATGGTAATGATGAAGAATTTGCAGTTTCACTTTTGAGACTGAAGGAGTTCATAAATAGTGAAGGATTTGATGGTGGTTTGATCAACGAGGAAGCAACTCTTGCCATTCTTTTCAACCGTCTAGGTTCGTGTAAGGCAGACAATAGGTTGGCAATCATGCGGTTGCTAAGAAGTATTTCTTCAGGGAATGATGAGAAAAAGGAGAAGATGGTAGATATTGAGTTCTTATCAGCAGTGGTGAAGTCACTCACAAGAGATTCAGAGGAGAGGAAAGAAGCTGTAGGGCTTTTGCTAGAGCTCTCTGACATTCAGGCCGTTCGCCGGCGAATCGGAAGAATTCAAGGCTGCATTGTTATGTTAGTTGCTATACTTAATGGGGATGACCCTGATGCCTCACATGATGCTTCAAAGTTATTGGATATATTGTCTAGTAATTCTCAAAATGCACTTCATATGGCAGAGGCTGGCTACTTTAGGCCACTAGTGCAGTATTTGAAAGAAGGGTCTGACATGAACAAGATCCTAATGGCGACAGCACTTTCAAGGTTGGAACTACCTGATCACAGCAAGCTTTCCCTTGGAGAAGATGGGGCAATAGAGCCTCTTGTGAACATGTTCAGCACAGGGAAACTGGAGTCCAAGTTATCAGCTCTAAATGCGCTGCAAAATCTGTCAACCGTGGCAGAAAATGTGCAGCGTTTGATCAGATCAGGAATTGCAGGATCTCTGCTACAACTTCTTTTCTCAGTTACATCTGTGCTCATGACATTGCGTGAGCCTGCATCAGCCATTCTTGCAAGAATTGCTCAGTCTGAATCCATCCTCGTCAATGAAGATGTGGCTCAGCAGATGCTTTCACTTTTGAATCTTTCCAGCCCCATAATCCAGGGCCATTTGTTAGAAGCTCTAAACAACATAGCCTCTCACCCTGGTGCATCAAGAGTGAGAAGCAAAATGAAGGAAAAAGGTGCACTTCAGCTTCTCTTACCCTTTCTGAAGGAAAACACCACCAAAATCAGGAGCAAGGTCTTGCATCTTTTGTACACTCTCTCTAAAGATCTAACAGATGAGTTAACTGAACATCTTGATGAAACTCACCTCTTAAACATAGTGAATATAGTTTCAACATCAACATCAGACAGTGAAAGAGCTGCAGCTGTTGGCATTCTGAGTAATCTTCCTGCTAGTAACAAAAAGGTGACTGATACACTGCAGAGGGCAAATTTGCTGCCAATTTTAATATCCATCATGTACACTATCACAGGAAGTAACTCATCCACAACAAATAGCTTAGCAGAGAGTATTGCCAGTGTTATGATCCGCTTCACCAATTCCTCTGACAAAAAACTACAACTTCTCTCAGCAGAACAAGGGGTGATTCCTTTGCTTGTAAAACTGCTCTCAAGCGGTTCACCAATCACAAAAGCAAGGGCTGCACTCTCACTGGCTCAACTCTCTCAGAATTCTCTTTCTCTTAGAAAGTCTAGAAAGTCAAGGTGGTTGTGTGTTCCTCCTTCCGTGAATGCATTTTGTGAAGTTCATGATGGATTTTGCTTTGTGAACAGCACTTTTTGTTTGGTCAAGGCTGGTGCTGTTTCTCCCCTCATCCAACTGTTGGAAGATACTGAGAGAGAAGCAGTTGAAGCTGCTCTGCATGCTCTTTCAACTCTTCTGCAAGATGAAATCTGGGAAGGTGGTGTCAATTGCATTGCCAAGTTATCTGGTGTGCAAGCCATCATAAAAAGTCTTGAAGTTGGTGATGCAAAGGTTCAAGAAAAAGCAATATGGATGTTGGAGAGAATATTCAAAGTTGCAGAACATAGAGTTAAGTATGGAGAATCTGCTCAGGTGGTTCTTATTGATCTTGCCCAGAAGAGTGATTCTAGATTGAAGTCAACAGTTGCAAAAGTTTTGGCTGAGCTTGAGCTCTTGCAATCTCAATCAAGTTACTTTTGA 2493 0.4184 MEMVEKRKFSKLLSELIVLADEVASLAKNSEIEVHIFAEFAMLVEKFSPIFIDLRDKNTVLDKPPIRKSLESLENELRRAKALTKSSNLRQPIKQIEDITHDIGRSFGLLLVASLEISVDFREKIGTLQRQLMNVRFDGSLSVASSPKSEASSSEVKLTAEIEEEIVNVSIDDVVLQLKNGNDEEFAVSLLRLKEFINSEGFDGGLINEEATLAILFNRLGSCKADNRLAIMRLLRSISSGNDEKKEKMVDIEFLSAVVKSLTRDSEERKEAVGLLLELSDIQAVRRRIGRIQGCIVMLVAILNGDDPDASHDASKLLDILSSNSQNALHMAEAGYFRPLVQYLKEGSDMNKILMATALSRLELPDHSKLSLGEDGAIEPLVNMFSTGKLESKLSALNALQNLSTVAENVQRLIRSGIAGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNEDVAQQMLSLLNLSSPIIQGHLLEALNNIASHPGASRVRSKMKEKGALQLLLPFLKENTTKIRSKVLHLLYTLSKDLTDELTEHLDETHLLNIVNIVSTSTSDSERAAAVGILSNLPASNKKVTDTLQRANLLPILISIMYTITGSNSSTTNSLAESIASVMIRFTNSSDKKLQLLSAEQGVIPLLVKLLSSGSPITKARAALSLAQLSQNSLSLRKSRKSRWLCVPPSVNAFCEVHDGFCFVNSTFCLVKAGAVSPLIQLLEDTEREAVEAALHALSTLLQDEIWEGGVNCIAKLSGVQAIIKSLEVGDAKVQEKAIWMLERIFKVAEHRVKYGESAQVVLIDLAQKSDSRLKSTVAKVLAELELLQSQSSYF 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00504 830 Gene3D - 179 318 IPR011989 -
Viun1g00504 830 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 376 418 IPR000225 GO:0005515
Viun1g00504 830 SMART arm_5 698 738 IPR000225 GO:0005515
Viun1g00504 830 SMART arm_5 365 405 IPR000225 GO:0005515
Viun1g00504 830 SMART arm_5 324 364 IPR000225 GO:0005515
Viun1g00504 830 SMART arm_5 491 531 IPR000225 GO:0005515
Viun1g00504 830 SMART arm_5 742 782 IPR000225 GO:0005515
Viun1g00504 830 SMART arm_5 626 666 IPR000225 GO:0005515
Viun1g00504 830 SMART arm_5 242 281 IPR000225 GO:0005515
Viun1g00504 830 Coils Coil 70 90 - -
Viun1g00504 830 Gene3D - 319 678 IPR011989 -
Viun1g00504 830 SUPERFAMILY ARM repeat 171 428 IPR016024 -
Viun1g00504 830 SUPERFAMILY ARM repeat 371 784 IPR016024 -
Viun1g00504 830 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 173 830 - -
Viun1g00504 830 Gene3D - 695 828 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00504 Viun-Chr1 4058619 4063039 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00504 215 830 U-box Gene Family AT1G76390 29.287 9.20e-49 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00504 K08332 - gmx:100791453 1347.41