Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00498 ATGTACGACACTATGTTGAAGCACGCTTCATTAAATGTTGCTTTCAGGCACGTAGTTGATGTTGTTCATATGATGGAGACAACACTTGATGATATTTCTGTTCAACAATTGAATGATGGTGGCCAGTGTGTGATGGACGACCAAATTGTTGACAATGACAACGATGTCGACCTTGTTCCGAGAGTTCACATGTGCTTCGAGACACTTGATGCAGTTAAAAAATTTTACAGAGACTTTGCTGTTAGAACTGGATTTGGTATTAGAATAAGAAGTTCAAAGAAGGGAAAGGACAACGAACTTAAATATGTTAAACTTGTCTGTTGTCGCGAAGGTAATTATGTCTTCACCATACGTCCAGAGCTTAAGACACTACCTAGCCAGACCAATCAATGTCAGGCTGGAATATCGGTCGGTAAAAAGGATGGGAAATGGCACATAAGAAGTGTTGTCATGGAGCACAGCCACAATATTAGTCCTATTGAATCAAGGCTGATATCAGGAAATCGTAAAGTTAATATTCATGCTAGGGAAACAGTTGACATAAACGACGAAGCCGGGGTCCGCATCAACAAGAGTTATCGTTCACTGGTGTGCGAAGCTGGAGGATATGAGAATGTTACTTTTATTGAGCGAGATGTGAGGAATTACATAGCTCATAAAAGAAGGCAATTATGCAAGGATGGGGATGGACAAGCTTTGCTTCGACACTTTTCCCACATGCGTGAAGTCAACAATGACTTCTTCTTTGAAATTGACATGGACGAAGACAATAGAATATCAAATGTTTTTTGGGCGGATTCACGGAGCCGAGCGGCATGCGAGTATTTTGGTGATGTTGTATCGTTTGACACAACATATTTGACAAACAAGTACGACATGCCATTTGCACAGTTTGTTGGTGTTAATCACCACGGGCAATCAATTTTATTGGGGTGTGGTCTAGTATCTGCAGAGGACACATCAACATTTGTATGGTTGTTTAGGTGTTGGTTACGTTGCATGTCCAACAGGGCACCTGAAGGGATCATCACTGACCAATGCAAAGCTATGCGCAATGCAATTCAAATTGTTTTCCCGAACACCAATCATAGATGGTGCCTTTGGCATATAATGAAAAAGGTTTCGGAAAAATTGCAGGGTTACACACAGTACAATGTTATCAAAAGTCAAATGAAGGCACTAGTGTATGACTCAAGTGGTGTTGACCAATTTGAGGTTGGTTGGAATGAATTCATCACAAATAACGGCCTTGTTAACAACGAGTGGCTATGTTCGTTGTACGAGGACAGACATCTGTGGGTGCCTTGTTATTTGAGAAATAAATTTTGGGCTGGAATGTCAACGACACAACGAAGTGAAGGTATGAATGCATTTTTTGATGGGTTCATAAATTCCACCACTTCATTGCAACAGTTCGTCGTCCAGTACGACAACGCACTTAGGCAAAAAGCAGAGAAGGAATTTGAGGCTGACTTCGCATCTGTTAACACCACAATTCCGTGTGGGTCGCAATCCCTAATTGAGAGGCAATTTCAGTTGCACTATACCCATGCTAAATTTGGTGAGATTCAGAATGAATTTAGAGCGAAGATGAATTGCTTTGTTATGAATGTTGTCAAAGATGGAACCATTTGGAATTACAATGTTAAGGAAAACTTCTTATGGAATGCCAAGAGGGCCAACAAATTTCATGACGTGCTGTTTGACTCCACCACAACAACAATCAAATGTACTTGTCTACTATTTGAGTTTCGTGGTATATTATGTCGACACTGTTTCTTAGTTCTTGGGCAGGAAGACATTGATTGTGTCCCTGAACAGTACGTCCTAAGGAGGTGGTCCAAAAATGTTAGAAGACGACACACTTTGATGAAAGCAGCGTACAACCGAAGTTCGGATGATCCACAAATGCAAAGATTCCAGTCATTACGGAAGAGATTTAATGACATCGGTGAGGTCGCATGTGAAACAGAAAGTGTTGCCCAATCGGTGTATGATCAGTTGAACACAATTGCAACTACATTAGGGTTACCAAATGAACCCAATCCCTTCAGATGTGGGGACGACCATCCAAGTGCTTGTCATGAGGATCACAGCTTACCCGACCATGTTATGTCTTCTGCACATCACAGCAATATTGTTCGAAGTCCCATTCACGTAAAAAGGAAAGGTAGACCACGGACAAATAGGTTGAAATCAACTGTGGAAAAGATAACAAAAAGGAAGAAAACAGCTGCGGCAAGAAACAAAGCATCTCGCAATTTAATGGACCCGCCGGCAATTCATTCAGAACCAAATTTCCAAGATATCCCAGTGCAAGACCATCAAACATTACAATCCTACATTCCACACGCAGGTTTCATGTCCCTTCTAACATCACTGCACTCTGAATTTAATCAGTGTCCCCTTCCCACCACAACAACAAACCTCGCATCAGTTGAGGATTACTGA 2451 0.4141 MYDTMLKHASLNVAFRHVVDVVHMMETTLDDISVQQLNDGGQCVMDDQIVDNDNDVDLVPRVHMCFETLDAVKKFYRDFAVRTGFGIRIRSSKKGKDNELKYVKLVCCREGNYVFTIRPELKTLPSQTNQCQAGISVGKKDGKWHIRSVVMEHSHNISPIESRLISGNRKVNIHARETVDINDEAGVRINKSYRSLVCEAGGYENVTFIERDVRNYIAHKRRQLCKDGDGQALLRHFSHMREVNNDFFFEIDMDEDNRISNVFWADSRSRAACEYFGDVVSFDTTYLTNKYDMPFAQFVGVNHHGQSILLGCGLVSAEDTSTFVWLFRCWLRCMSNRAPEGIITDQCKAMRNAIQIVFPNTNHRWCLWHIMKKVSEKLQGYTQYNVIKSQMKALVYDSSGVDQFEVGWNEFITNNGLVNNEWLCSLYEDRHLWVPCYLRNKFWAGMSTTQRSEGMNAFFDGFINSTTSLQQFVVQYDNALRQKAEKEFEADFASVNTTIPCGSQSLIERQFQLHYTHAKFGEIQNEFRAKMNCFVMNVVKDGTIWNYNVKENFLWNAKRANKFHDVLFDSTTTTIKCTCLLFEFRGILCRHCFLVLGQEDIDCVPEQYVLRRWSKNVRRRHTLMKAAYNRSSDDPQMQRFQSLRKRFNDIGEVACETESVAQSVYDQLNTIATTLGLPNEPNPFRCGDDHPSACHEDHSLPDHVMSSAHHSNIVRSPIHVKRKGRPRTNRLKSTVEKITKRKKTAAARNKASRNLMDPPAIHSEPNFQDIPVQDHQTLQSYIPHAGFMSLLTSLHSEFNQCPLPTTTTNLASVEDY 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00498 816 SMART 26again6 575 602 IPR006564 GO:0008270
Viun1g00498 816 ProSiteProfiles Zinc finger SWIM-type profile. 564 600 IPR007527 GO:0008270
Viun1g00498 816 Pfam SWIM zinc finger 574 592 IPR007527 GO:0008270
Viun1g00498 816 MobiDBLite consensus disorder prediction 740 760 - -
Viun1g00498 816 Pfam FAR1 DNA-binding domain 74 158 IPR004330 -
Viun1g00498 816 Pfam MULE transposase domain 279 373 IPR018289 -
Viun1g00498 816 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 47 668 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00498 Viun-Chr1 4002714 4005339 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Viun1g00498 MULE 1.3e-34 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00498 - - vun:114180824 1023.46