Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00493 ATGGAGCAACCTTGTTCCATGAAAAAGTACACTTATGATGTTTTCCTCAGTTTTAGAGGAGATACCCGCTTTGGTTTCACTGGTCATCTTTACAATGCTTTACGTCAAAGGGGTATCAGCACTTTCATGGATCATGAGGCGCTTGAGAGAGGAGAACAAATTTCAGCTACCATTTTCAAAGCCATTGAAGAGTCTAGGATGGCCATTGTTGTGTTCTCGAAAAGCTATGCTTCCTCAACATGGTGCCTTGAAGAACTTCTCCAAATCCTCGATTGTAAGAAAACCAAGAAACTCAAAGTTTATCCAATATTTTACAACGTGGATCCATCAGAGATACGACATCAGACTGGAAGTTATGGTCAACAATTAGCTAACCATGAAAACAAAATGAGGTACAAAAAGGAAAAGGTGGAAAATTGGAGACTTGCTCTGCATGAAGCTTCCAATCTTGTAGGGTGGAGCTTCAAAGATGGATATGGATATGAGTATGAACTTATCACACAGATTGTTGACACGGTGGGCATACCAAAAAGAAAGCTTTTAACTGTTGATGAAAATCTTGTTGGAGTGGAGTTACGAATACCCCAAATAGAATTCCGTTTGCAAATATCTGATCCCGCTATCATCATGATGGGAATATGTGGAGTTAGTGGAATAGGTAAAACCACTCTGGCTCAAGTTTTGTACAATTACATCAGCCAACAATTTGAAGGTTCATGCTTTCTCAACGATGTCAGAGGAAATTCAGCAAAATATGGGTTAGCATATCTCCAGGAGGCAATTATTTCTGATATAGCTGGTGACAGTACCAAGGTGGTTAATGAGAACCAAGGAATTCCAATTCTTATTAGAAAGTTGCAAGGCAAAAGGGTTCTTCTGATCCTTGATAATGTGGACAAGCTGGAGCAATTGGAGTATTTGGCAGGAGAATGCAACTGGTTTGGTTTGGGAAGTAGAATTGTCATAACTAGCTCGTGTAAAGATGTTCTGGCTTCTCATGGAGTTAAAAATGTATATGATGTACCTAAGTTGGATAATTATGAAGCTATTCAACTTCTAAGTTCCATGGTAACTGTTGGACCTGTACCTGGTTATTATTATGGAGTTTGGAAACGTGTAGTTGACTGTTCCAATGGCCTTCCATTGGCTTTGAAGTATATTGGTTCTGATTTGTTGGAAAAAATGAAGGCTGTGGATTGTTATTTGTCAGAAACATCAGTTGATGAATTGGAGATTGCGCTAGAAAGATATGAAGGAGTTTGTGATGGAGGAGAAATTCAGAGTTTACATAAAGTGATTTATTTTAGTTTGAATGAATGTGAGAAGAGAATTTTCCTTGACATTGCTTGTTTCTTCATAGGAGAGACATTATCATATGTTGAGGAAATACTATCAGCTTGTGGTTTCGATCCAAAGTACAGTATTAGCAGACTTATTGATAGATCTCTGCTATCTGTCACTCCCAGTGGAAACTTGATGATGCATGACAATATCAAAGACATGGCTATGAAAATAGTGGAACAGGAATCACCCCTGCATCCAGGAAAACGAAGTAGATTATGGTACCCTCAAGATGTTATTCATGTTTTAAATGAAAATGAGGGAACGGATCAAATTGAAGTTATGATGTTGGTTGACTTGCCACAAGGAAATGAGGTACTGAAGTTGAGTGATAAAGCCTTCAAAGATATGAAAAACCTTAGAATATTAATTATTAAGGATGCCATATATTCTGGAGTCCCTCAATATCTCTCAAATAGCTTGAGAGTCTTGATATGGAGTGGATATCCTTCAGACTGTTTACCACTTGATTTTCTCAACTTGCCTTCTGATTGTCTCATTTTGAACAATTTCAAGAATATGCAGTGTCTGACAAAATTGGATTTCACTGATTGTGAATTTTTGACAGAAGTACCTGACATTTCAGGAATCTCTGACTTGAGGGTATTGAATGTAGATAATTGCATAAATTTGATCAAGATTCATGATTCTGTTGGATTTCTTGGTAATCTTGAAGTGCTAACTGCATCTGGATGCAGTTGTCTAGAAATAATTCCATCAACATTCAAGTTGGCCTCTCTTAGAGAGCTCACTTTCTCTGAGTGCTTGAGACTTGTAAGGTTTCCAAAAATATTGTGTGAGATACAAAATTTGTGTTATCTCAACTTGTGGCAAACTGCAATAGAAGAATTACCATTTTCTATTGGAAATCTTAGAGGACTTGAATCTTTAAACCTAATGGATTGTGCTAGGCTTGATAAGCTACCTAGTAGCCTTTTCACACTTCCAAGACTAATGGAAATTCAAGCTGACTCATGTAGAAGGTTTGATATTTCTGTTGAGTGTGAAAATCATGAACAGCTGAAATCAACTGCTTCTTCAAATACTGTTTATCTGTATCTGAGCTCTTGCAACTTAACAACTGAACATCTTGTTACATGTCTCAGTGGCTTTGCTGGTGTTGTATATTTGGACATATCTTACAATAATTTTACAGTCCTTCCTGCATGCATTAAGGAATGTGTTCATTTGAAGACTATTCTACTAAGCAATTGCAAGCAGCTTCAACACATTTCAGTGATACCCCCTAAATTAAAAGATGTAAATGCATTGAACTGCACATCATTGACATCCCAGTCATCAAATGTTCTATTGAACCAGACATTCCATGCAACTAGGCAAAGTACTGTAATTCTTCCAGGTTCAAGGATTCCAGAATGGTTTGATCATTTTAGCAGTGAAAGATCCATAATCTTTTGGGGTCGTGAGAGGTTCCCGAGAATTTGTGTGTGTGTTTCTTTTGGAATGGTGGGAAATCCACTGCACCATTTTCGAGTTAGAATAATCATCAACGGCTACAAAAGCATACTGTCCCAACATTGCTACGATTGGTCAATTGAGACAGATCATGTGTGGCTATTTGATCTAACTGCATTTGTTAATCATAATGATCTAATTGGAACATTTGTGAAGAGTGATTGGAACAGTGTGGAGATTGAAGTGGAAAGGAATGCTTGTATGCTGGATGAAAATGCAAGAATAATGGCTACTGTGAAATGGTATGGAATTCATGTATATAGGGAAGAAAGTAAAATGGAGGACATTTCATTCACAAAACCTAAAAATCTGCAAGAAAATAGTACAAGTAGTAAAAGGGTTGGAAGCCAAGTTTTGGATTCATTGAAACGCCAAAAGGGAAATTTGGAAGTGATTTCTCTGTGGGATTGA 3228 0.3733 MEQPCSMKKYTYDVFLSFRGDTRFGFTGHLYNALRQRGISTFMDHEALERGEQISATIFKAIEESRMAIVVFSKSYASSTWCLEELLQILDCKKTKKLKVYPIFYNVDPSEIRHQTGSYGQQLANHENKMRYKKEKVENWRLALHEASNLVGWSFKDGYGYEYELITQIVDTVGIPKRKLLTVDENLVGVELRIPQIEFRLQISDPAIIMMGICGVSGIGKTTLAQVLYNYISQQFEGSCFLNDVRGNSAKYGLAYLQEAIISDIAGDSTKVVNENQGIPILIRKLQGKRVLLILDNVDKLEQLEYLAGECNWFGLGSRIVITSSCKDVLASHGVKNVYDVPKLDNYEAIQLLSSMVTVGPVPGYYYGVWKRVVDCSNGLPLALKYIGSDLLEKMKAVDCYLSETSVDELEIALERYEGVCDGGEIQSLHKVIYFSLNECEKRIFLDIACFFIGETLSYVEEILSACGFDPKYSISRLIDRSLLSVTPSGNLMMHDNIKDMAMKIVEQESPLHPGKRSRLWYPQDVIHVLNENEGTDQIEVMMLVDLPQGNEVLKLSDKAFKDMKNLRILIIKDAIYSGVPQYLSNSLRVLIWSGYPSDCLPLDFLNLPSDCLILNNFKNMQCLTKLDFTDCEFLTEVPDISGISDLRVLNVDNCINLIKIHDSVGFLGNLEVLTASGCSCLEIIPSTFKLASLRELTFSECLRLVRFPKILCEIQNLCYLNLWQTAIEELPFSIGNLRGLESLNLMDCARLDKLPSSLFTLPRLMEIQADSCRRFDISVECENHEQLKSTASSNTVYLYLSSCNLTTEHLVTCLSGFAGVVYLDISYNNFTVLPACIKECVHLKTILLSNCKQLQHISVIPPKLKDVNALNCTSLTSQSSNVLLNQTFHATRQSTVILPGSRIPEWFDHFSSERSIIFWGRERFPRICVCVSFGMVGNPLHHFRVRIIINGYKSILSQHCYDWSIETDHVWLFDLTAFVNHNDLIGTFVKSDWNSVEIEVERNACMLDENARIMATVKWYGIHVYREESKMEDISFTKPKNLQENSTSSKRVGSQVLDSLKRQKGNLEVISLWD 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00493 1075 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 153 IPR035897 -
Viun1g00493 1075 Gene3D Ribonuclease Inhibitor 707 921 IPR032675 -
Viun1g00493 1075 PRINTS Disease resistance protein signature 736 752 - -
Viun1g00493 1075 PRINTS Disease resistance protein signature 210 225 - -
Viun1g00493 1075 PRINTS Disease resistance protein signature 377 391 - -
Viun1g00493 1075 PRINTS Disease resistance protein signature 285 299 - -
Viun1g00493 1075 SMART till_3 11 150 IPR000157 GO:0007165
Viun1g00493 1075 SUPERFAMILY L domain-like 495 880 - -
Viun1g00493 1075 Pfam NB-ARC domain 201 398 IPR002182 GO:0043531
Viun1g00493 1075 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 784 IPR044974 GO:0006952
Viun1g00493 1075 ProSiteProfiles TIR domain profile. 10 144 IPR000157 GO:0007165
Viun1g00493 1075 Gene3D - 6 178 IPR035897 -
Viun1g00493 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 448 IPR027417 -
Viun1g00493 1075 Pfam TIR domain 12 178 IPR000157 GO:0007165
Viun1g00493 1075 Gene3D - 179 337 IPR027417 -
Viun1g00493 1075 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 177 - -
Viun1g00493 1075 Gene3D Ribonuclease Inhibitor 537 706 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00493 Viun-Chr1 3969108 3973533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00493 12 773 WRKY Transcription Factor Family AT4G12020 30.692 1.79e-73 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00493 - - gmx:100796191 1674.06