Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00490 ATGGCTACATTGGTTGCTCCTCCCGACCACTCTCCTGTGGAAGATGCAGAATCTCTCAGGAAAGCTGTGAAAGGTTGGGGAGCTGATGGAAAAGCCATTATATCAATACTAGGCCATAGAAATGCTGCACAGAGGACCCAAATCAGAGAAGCATACCACAATCTCTTCCAAGAGGATCTCATCAAACGCCTTGAGTCTGAGCTCTCCGGTGACTTTGAGAGAGCAATGTATCGTTGGATATTGGAACCTGCAGAACGTGAGGCTTTGCTGGCCAATATAGCACTTAAGAGGGATGAAAAAAGCTACCAAGTGATTGTGGAAATTTCGTGTGTTCTTTCACCTGAAGAGCTTTTTGCTGTGAGACGTGCCTACCACAACAGGTTCAAACGTTCCATGGAGGAAGATGTGGCTGCTAATACCACTGGCCATCTTCGCCAGCTATTGGTAGGGTTGGTGAGCTCATTTAGGTATGGTGGGAGTGAGATTAATGCACGATTGGCACAATCTGAAGCTGATGCTCTTCATGAGGCTATCAAAAACAAGAACAAAAGCAATGAAGAAATTATTAGGATCCTCACCACAAGGAGCAAAACCCAACTTGTGGCCACTTTCAACCGTTACAGGGATGATCATGGCATTGCCATTACAAAGAAATTGTCCGATGAAGGTTCTAATGAGTTTTTTACGGCAGCCAATTTAGCTATTAGCTGCATCAATGATCATAAGAAGTACTATGAAAAGGTTCTGCGAAATGCCATGGAAAATATTGGAACCGATGAGGAAGCAGTGACACGTGTGATTGTGACAAGGGCAGAGAAGGATCTGAAGGAGATAAAAGATGTGTATTACAAGAGAAACAGTGTTGATCTTGAGCATGTTGTGGCCAAAGAAACTTCCGGAGACTACAAGAAGTTTCTGCTCACTCTCATGGGCCATGATGACTGA 945 0.4423 MATLVAPPDHSPVEDAESLRKAVKGWGADGKAIISILGHRNAAQRTQIREAYHNLFQEDLIKRLESELSGDFERAMYRWILEPAEREALLANIALKRDEKSYQVIVEISCVLSPEELFAVRRAYHNRFKRSMEEDVAANTTGHLRQLLVGLVSSFRYGGSEINARLAQSEADALHEAIKNKNKSNEEIIRILTTRSKTQLVATFNRYRDDHGIAITKKLSDEGSNEFFTAANLAISCINDHKKYYEKVLRNAMENIGTDEEAVTRVIVTRAEKDLKEIKDVYYKRNSVDLEHVVAKETSGDYKKFLLTLMGHDD 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00490 314 PANTHER ANNEXIN 9 309 - -
Viun1g00490 314 SMART annex3 27 79 IPR018502 GO:0005509|GO:0005544
Viun1g00490 314 SMART annex3 182 235 IPR018502 GO:0005509|GO:0005544
Viun1g00490 314 SMART annex3 257 309 IPR018502 GO:0005509|GO:0005544
Viun1g00490 314 SMART annex3 99 151 IPR018502 GO:0005509|GO:0005544
Viun1g00490 314 ProSiteProfiles Annexin repeat profile. 10 81 IPR018502 GO:0005509|GO:0005544
Viun1g00490 314 PRINTS Annexin family signature 297 310 IPR001464 GO:0005509|GO:0005544
Viun1g00490 314 PRINTS Annexin family signature 64 80 IPR001464 GO:0005509|GO:0005544
Viun1g00490 314 PRINTS Annexin family signature 24 46 IPR001464 GO:0005509|GO:0005544
Viun1g00490 314 PRINTS Annexin family signature 253 273 IPR001464 GO:0005509|GO:0005544
Viun1g00490 314 ProSiteProfiles Annexin repeat profile. 240 311 IPR018502 GO:0005509|GO:0005544
Viun1g00490 314 ProSiteProfiles Annexin repeat profile. 82 153 IPR018502 GO:0005509|GO:0005544
Viun1g00490 314 FunFam Annexin 1 81 - -
Viun1g00490 314 ProSitePatterns Annexin repeat signature. 257 309 IPR018252 GO:0005509|GO:0005544
Viun1g00490 314 Gene3D Annexin 82 152 IPR037104 GO:0005509|GO:0005544
Viun1g00490 314 Gene3D Annexin 165 235 IPR037104 GO:0005509|GO:0005544
Viun1g00490 314 ProSiteProfiles Annexin repeat profile. 165 236 IPR018502 GO:0005509|GO:0005544
Viun1g00490 314 Gene3D Annexin 1 81 IPR037104 GO:0005509|GO:0005544
Viun1g00490 314 PRINTS Plant annexin signature 118 132 IPR009118 -
Viun1g00490 314 PRINTS Plant annexin signature 225 243 IPR009118 -
Viun1g00490 314 PRINTS Plant annexin signature 160 180 IPR009118 -
Viun1g00490 314 Gene3D Annexin 242 313 IPR037104 GO:0005509|GO:0005544
Viun1g00490 314 FunFam Annexin 165 239 - -
Viun1g00490 314 SUPERFAMILY Annexin 3 314 IPR037104 GO:0005509|GO:0005544
Viun1g00490 314 FunFam Annexin 82 152 - -
Viun1g00490 314 FunFam Annexin 241 312 - -
Viun1g00490 314 Pfam Annexin 15 76 IPR018502 GO:0005509|GO:0005544
Viun1g00490 314 Pfam Annexin 170 228 IPR018502 GO:0005509|GO:0005544
Viun1g00490 314 Pfam Annexin 90 151 IPR018502 GO:0005509|GO:0005544
Viun1g00490 314 Pfam Annexin 247 309 IPR018502 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00490 Viun-Chr1 3925907 3928291 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00490 K17098 - gmx:100813609 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g00490 1 3925907 3928291 Viun1g00490 1 3925907 3928291 ECH
Viun1g00490 1 3925907 3928291 Viun11g00123 11 847825 850473 PCT