LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun1g00466	ATGGATACAGGTTTGAGTCTTAAACTTGGTCTTGAATTTGATAACTTAGAAGATGCATGGAAGTTTTGGGTTAATTATGGTGGTAGTAAAGGTTTTGGAGTTAGAAAACACTACCCTAGCAAGAATAAAAAAGATGGGTGTATTACTTCTTACATCTATGTTTGTTGCAAGGAAGGTATGCGAAAACCAGATAAAAGAGACTTTAAGACCAATAATCCTCGACCTGAGACAAGAACAGGATGTGCTACAAGAATGAAAGTTAAAAGAGTTGGTGAAAGATATAGAGTAGTTGATTTTATTGATGATCATAACCACCCACTTCATCCACCAGAAACAGTTCATCTATTACCTTGTCAAAGAAAAATAACAGATTGTCAAGCATATGATCTTGAAATGGCAGAACAGGCAGGGATTCAACAAAAGGCATCATTTGATTTGATGAGTAAATATACAGGAGGTAGAGAGAATTTAGGCTATACAAGAGAAGATGCAAAGAACTATCTGAACTCAAAGAGGCGAAGAGATATGGCATATGGTGAAGCTGGAATTTTGTTACAATATTTCCAACAACAACTAATAGATAATCCTTCATTTTTCCATGCCTACCAAATGGATTTGGAAGAACAAATAACAAACATATTTTGGGCTGATGCAAGAATGTTATTTGATTATCATTGTTTTGGAGATGTCATTTTGTTGGATACAACATATTGTACAAATGGAGATCATAGGCCTCTTGCAATTTTCTCGGGATTTAATCATTATAGAGGAGGGGTGATATTTGGGGCAGCCTTATTGTATGATGAGACCATTGAGTCCTTCAAATGGTTATTTCAAACATTTTTGCAAGCACACAATCAAAAAAATCCACAAACTATTTTTACTGATCAAGAGACCAAGCCATGA	906	0.3499	MDTGLSLKLGLEFDNLEDAWKFWVNYGGSKGFGVRKHYPSKNKKDGCITSYIYVCCKEGMRKPDKRDFKTNNPRPETRTGCATRMKVKRVGERYRVVDFIDDHNHPLHPPETVHLLPCQRKITDCQAYDLEMAEQAGIQQKASFDLMSKYTGGRENLGYTREDAKNYLNSKRRRDMAYGEAGILLQYFQQQLIDNPSFFHAYQMDLEEQITNIFWADARMLFDYHCFGDVILLDTTYCTNGDHRPLAIFSGFNHYRGGVIFGAALLYDETIESFKWLFQTFLQAHNQKNPQTIFTDQETKP	301

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun1g00466	301	PANTHER	OS01G0519700 PROTEIN	7	298	-	-
	Viun1g00466	301	Pfam	MULE transposase domain	230	299	IPR018289	-
	Viun1g00466	301	Pfam	FAR1 DNA-binding domain	21	108	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun1g00466	Viun-Chr1	3734018	3734923	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Viun1g00466		FAR1	3.1e-19	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun1g00466	-		-	vun:114184605	557.755