LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun1g00459	ATGGAGATGTCTGTTCAACGAGAACCTCATAATACCAATGGCATATCCGGATCAGGATCAGGGTCTTGTCTTTATGATCTGTTTTGTTCAGAAACACCTAATCTCAATGCTCTCAATTTAAAAGAACGATGGCTGTCTTCTGGTGGAGGACCGCAGAAAAGATTAGACAATTTGATGCGTCAAGCTGGGAACAGGTATTGTGCCGATTGTGGATCATTGGAGCCAAAATGGGTGTCTATAAGCCTTGGAGTTTTTATTTGCATCAAATGCTCTGGAGTACACAGAAGCCTCGGTGTCCATATATCCAAGGTTCTTTCCCTAAAGCTAGATCAATGGTCGGATGAACAAGTTGATGAATTGGTGAAATTGGGTGGAAATACAGTAGTGAACAAGAAGTATGAAGCTTACCTGCCAAGTAGCATTAGAAAACCAAAACCTCATTCTTCCATCGAAGAACGCTCAGATTTCATTAGGAGAAAATATGAGTTTCTGCAGTTTGTGGAAGGTGATGAGAACATGTCTTGCCCCTTCATACCATCCAATTCAGGAAGTTCATCAGATTCTCAAATTGGTTCCTCAAGACTTCAGTCCATACGAGAAAAAAAACAGTATTCTGATAATAAACAACAAACTAAACACCGTATTTGCAGAACATTTCGAAATAGTCGGGGAAGAAAAGAAACTCATGACTTTAGGTCTTCAAAGAAGAGCACCTCATTGGCAGGTATGACTGAATTTGTTGGGTTGATAAAGGTGAATGTGGTTAAAGGAATTAATCTTGCTGTTCGTGATGTAATGACTAGTGATCCTTATGTGATCATATCCCTTGGTCACCAATCAGTGAAGACTCGTGTCATAAAGAACAATTTAAACCCAATTTGGAATGAAAGCCTAATGTTGTCAATTCCTGATAACATTCCTCCTCTTAAAATTATTGTGTATGACAAAGATACTTTCTCCACCGATGATTTTATGGGTGAGGCTGAAATAGACATTCAACCTCTGGTCTCAGCTGCAATGGAATATGAAAAATGTTCAGCAAGTGGTGACAACACTCTCATTAAAGATGGCATAATCTCCCTTGAAAATGGCAAAATCAAACAAGAGGTCTCAGTCAGACTCCAACATGTTGAGAGAGGTGTGTTGGAGATTGAACTTGAATGTGTTCCTTTAACTCAGTAG	1182	0.3934	MEMSVQREPHNTNGISGSGSGSCLYDLFCSETPNLNALNLKERWLSSGGGPQKRLDNLMRQAGNRYCADCGSLEPKWVSISLGVFICIKCSGVHRSLGVHISKVLSLKLDQWSDEQVDELVKLGGNTVVNKKYEAYLPSSIRKPKPHSSIEERSDFIRRKYEFLQFVEGDENMSCPFIPSNSGSSSDSQIGSSRLQSIREKKQYSDNKQQTKHRICRTFRNSRGRKETHDFRSSKKSTSLAGMTEFVGLIKVNVVKGINLAVRDVMTSDPYVIISLGHQSVKTRVIKNNLNPIWNESLMLSIPDNIPPLKIIVYDKDTFSTDDFMGEAEIDIQPLVSAAMEYEKCSASGDNTLIKDGIISLENGKIKQEVSVRLQHVERGVLEIELECVPLTQ	393

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun1g00459	393	Pfam	C2 domain	249	338	IPR000008	-
	Viun1g00459	393	ProSiteProfiles	C2 domain profile.	232	346	IPR000008	-
	Viun1g00459	393	Gene3D	Arf GTPase activating protein	40	174	IPR038508	-
	Viun1g00459	393	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	246	341	IPR035892	-
	Viun1g00459	393	SUPERFAMILY	ArfGap/RecO-like zinc finger	52	168	IPR037278	-
	Viun1g00459	393	SMART	C2_3c	249	344	IPR000008	-
	Viun1g00459	393	CDD	C2_ArfGAP	247	380	-	-
	Viun1g00459	393	FunFam	stromal membrane-associated protein 1 isoform X1	42	172	-	-
	Viun1g00459	393	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	52	174	IPR001164	GO:0005096
	Viun1g00459	393	Pfam	Putative GTPase activating protein for Arf	53	168	IPR001164	GO:0005096
	Viun1g00459	393	PRINTS	HIV Rev interacting protein signature	83	100	IPR001164	GO:0005096
	Viun1g00459	393	PRINTS	HIV Rev interacting protein signature	104	125	IPR001164	GO:0005096
	Viun1g00459	393	PRINTS	HIV Rev interacting protein signature	64	83	IPR001164	GO:0005096
	Viun1g00459	393	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	23	-	-
	Viun1g00459	393	SMART	arf_gap_3	53	174	IPR001164	GO:0005096
	Viun1g00459	393	Gene3D	C2 domain	246	392	IPR035892	-
	Viun1g00459	393	CDD	ArfGap	55	161	-	-
	Viun1g00459	393	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	49	393	IPR044518	GO:0005096\|GO:0005543

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun1g00459	Viun-Chr1	3693295	3702590	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun1g00459	45	393	C2H2 Transcription Factor Family	AT4G21160	46.389	1.25e-109	323

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun1g00459	K12486		-	gmx:100799376	569.311