Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00457 ATGGAGATGTCTGTTCAACGAGAACCTCATAATACCAATGGCATATCCGGAGGACCGCAGAAAAGATTAGACAATTTGATGCGTCAAGCTGGGAACAGGTATTGTGCCGATTGTGGATCATTGGAGCCAAAATGGGTGTCTATAAGCCTTGGAGTTTTTATTTGCATCAAATGCTCTGGAGTACACAGAAGCCTCGGTGTCCATATATCCAAGGTTCTTTCCCTAAAGCTAGATCAATGGTCGGATGAACAAGTTGATGAATTGGTGAAATTGGGTGGAAATACAGTAGTGAACAAGAAGTATGAAGCTTACCTGCCAAGTAGCATTAGAAAACCAAAACCTCATTCTTCCATCGAAGAACGCTCAGATTTCATTAGGAGAAAATATGAGTTTCTGCAGTTTGTGGAAGGTGATGAGAACATGTCTTGCCCCTTCATACCATCCAATTCAGGAAGTTCATCAGATTCTCAAATTGGTTCCTCAAGACTTCAGTCCATACGAGAAAAAAAACAGTATTCTGATAATAAACAACAAACTAAACACCGTATTTGCAGAACATTTCGAAATAGTCGGGGAAGAAAAGAAACTCATGACTTTAGGTCTTCAAAGAAGAGCACCTCATTGGCAGGTATGACTGAATTTGTTGGGTTGATAAAGGTGAATGTGGTTAAAGGAATTAATCTTGCTGTTCGTGATGTAATGACTAGTGATCCTTATGTGATCATATCCCTTGGTCACCAATCAGTGAAGACTCGTGTCATAAAGAACAATTTAAACCCAATTTGGAATGAAAGCCTAATGTTGTCAATTCCTGATAACATTCCTCCTCTTAAAATTATTGTGTATGACAAAGATACTTTCTCCACCGATGATTTTATGGGTGAGGCTGAAATAGACATTCAACCTCTGGTCTCAGCTGCAATGGAATATGAAAAATGTTCAGCAAGTGGTGACAACACTCTCATTAAAGATGGCATAATCTCCCTTGAAAATGGCAAAATCAAACAAGAGGTCTCAGTCAGACTCCAACATGTTGAGAGAGGTGTGTTGGAGATTGAACTTGAATGTGTTCCTTTAACTCAGTAG 1086 0.3932 MEMSVQREPHNTNGISGGPQKRLDNLMRQAGNRYCADCGSLEPKWVSISLGVFICIKCSGVHRSLGVHISKVLSLKLDQWSDEQVDELVKLGGNTVVNKKYEAYLPSSIRKPKPHSSIEERSDFIRRKYEFLQFVEGDENMSCPFIPSNSGSSSDSQIGSSRLQSIREKKQYSDNKQQTKHRICRTFRNSRGRKETHDFRSSKKSTSLAGMTEFVGLIKVNVVKGINLAVRDVMTSDPYVIISLGHQSVKTRVIKNNLNPIWNESLMLSIPDNIPPLKIIVYDKDTFSTDDFMGEAEIDIQPLVSAAMEYEKCSASGDNTLIKDGIISLENGKIKQEVSVRLQHVERGVLEIELECVPLTQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00457 361 ProSiteProfiles C2 domain profile. 200 314 IPR000008 -
Viun1g00457 361 SUPERFAMILY ArfGap/RecO-like zinc finger 20 136 IPR037278 -
Viun1g00457 361 FunFam stromal membrane-associated protein 1 isoform X1 6 140 - -
Viun1g00457 361 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 214 309 IPR035892 -
Viun1g00457 361 CDD C2_ArfGAP 215 348 - -
Viun1g00457 361 MobiDBLite consensus disorder prediction 1 19 - -
Viun1g00457 361 SMART arf_gap_3 21 142 IPR001164 GO:0005096
Viun1g00457 361 MobiDBLite consensus disorder prediction 1 21 - -
Viun1g00457 361 Pfam Putative GTPase activating protein for Arf 21 136 IPR001164 GO:0005096
Viun1g00457 361 Gene3D Arf GTPase activating protein 5 142 IPR038508 -
Viun1g00457 361 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 16 361 IPR044518 GO:0005096|GO:0005543
Viun1g00457 361 Gene3D C2 domain 214 360 IPR035892 -
Viun1g00457 361 PRINTS HIV Rev interacting protein signature 32 51 IPR001164 GO:0005096
Viun1g00457 361 PRINTS HIV Rev interacting protein signature 51 68 IPR001164 GO:0005096
Viun1g00457 361 PRINTS HIV Rev interacting protein signature 72 93 IPR001164 GO:0005096
Viun1g00457 361 ProSiteProfiles ARF GTPase-activating proteins domain profile. 20 142 IPR001164 GO:0005096
Viun1g00457 361 Pfam C2 domain 217 306 IPR000008 -
Viun1g00457 361 SMART C2_3c 217 312 IPR000008 -
Viun1g00457 361 CDD ArfGap 23 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00457 Viun-Chr1 3693295 3706023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00457 14 361 C2H2 Transcription Factor Family AT4G21160 46.518 1.65e-110 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00457 K12486 - gmx:100799376 523.472