Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00449 ATGTCCAGCGACACCTCCTTCGCGGACCACAAGCTCTGCGGTTTCCTCTGTGCGGTTCTCACAGCCACTGACCGCGACTCCGATCCAGCCTTCGCCGAGCGCTGCGAAATCTTCAGCGACGAGGGCGAGGTCGGGTTCCATTCCCAAACCGGCGTCGTTTTGTCTACGGTGCTGAATTCGTCTCAATGCGGCGGCGGCGGCGGAGGATCGAAAGCCAAGAGGACGCATGGCGTTGGGATGGTAAACGGGAGCATGAGCGTGGTTCACCAGCTCCACGCTCTTGTCACCCGCAAGTGCACGAAAATAGACGCACGCGTGGTGTGCGTCGAGGCGCCTAGGGTTGTGCTGCTGGTTGACGTGTACCTTCCTATTCAAGTATGGAGTGGCTGGCAGTTCCCGCGGTCGGGGGCAGTTGCCGCCGCCGTTTTTCGCCATTTGAGCTGTGATTGGGATGAGCGTTGTTCAATGCTTTCATATCCGGACTATTGTAGGAAGACTCATGGAGCAAATGAGAGCATTTGGAACCTTTCTGATTGTCATGTACTTTGTTGCAAGCTCCATCCCCATGTTAGCAGTTCTTCAAGGAAAAGCCTATTTGAACTTCATGAACTTTTCAAGACACTACCTGGCGTAGGAAAACAGCGGATGTTTAATGGCTCCAAAATAATTCCTATGGATCACTCATGCAGATCAGGCATTTGGGAGTTATCTGATGATATTTTAACGAAAATTTTATCTTCCCTGGACCCAATGGACCTCATTAGGGTTTCTGAAACGTGTCATCATCTAAGATCATTGGCTGCTTCTGTAATGCCTTGTACAAAGTTAAATCTGTTTCCTCATCAGCAGGCAGCAGTTGAGTGGATGTTGCAACGCGAGCGAAATGCTGAGCTTTTGCCACACCCTTTATATGCAGTTCTCTCTACTGAAGATGGTTTTAGTTTCCATGTAAATACCGTTTCTGGTGAAATTGTCACTGGGGAAGCTCCCACCGTCAGGGATTTTCGGGGAGGAATGTTTTGTGATGAGCCTGGTTTGGGTAAGACTGTAACAGCTCTCTCTCTTATTATGAAGACACGAGGTACATTGGCAGATCCACCAGATGGGGCTCAAGTTGTCTGGTGTCAACATAATGGTAATCAGAAATGTGGTTACTATGAGATCAGTGGTAATAACATAACTGGTTGTTCTACATTGGGTAAAAGGAATGTGAGCCAATATGTCAGTAGAACTAATGATAACCATGATTACTCCTCCAAAAGAGCTAGAATGTCAAATCCTGACCAGCAAATGATTAAACTTCAGGGTTCATGTTCCATGGAATTAAGCAAGTCACCTGTGGAGGCACACTTTAATGAATCTATGCATTCAAATCAGTACACTAGGAGTTTGAGCCGCATAAAGAAAAATCTATGCTTCACAAATGAAGAGGAAGCTATGATATCCAAGGAAAAGGAAATTGGTGAAGGATTAATTAAAGCAAAGCATGCATCAGATGTTACACCTCATTTATCTCTAAAGAAGCTACCCAGGAAGCGTGAAGGTGATCCTTTTGAGTACAGTGATACATGGATTCAGTGTGACGCTTGTCACAAGTGGCGAAAGCTGGCAGACAATAGTATGGCTAGTTCTAGTGCAGCATGGTTTTGTAGCATGAACCCTGATCCTCTTTATCAAAGTTGTAGTGTCCCTGAACAACATTTTCATACTACGTCTAGGATAACATACTTGCCAGGGTTTCACTTAAAAGGAACTCATGGTGGTGACAAACAAAATGTTTGTTTTTTCACCAGCGTGCTTAAGGAGCACTACTCACTGATAAATTCTCAGACAAAAAAAGCCCTGGCGTGGTTGGCTAAAATTTCAACCGACAAGCTTGCAGGTATGGAAACAAATGGAATAAGAGGTCCTATTTTAAACACGTGTACTGCATCTAGTAGACATTTTAATGCGTTCCACAAAGTATTTCAAGCATTTGGCCTCCTAAAGAGAGTAGACAAAGGTGTGTGCAAGTGGTTCTATCCTCAACATCTTAACAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCACTCCGTGAGCCTTTAGATTTTGTTAGGTTATACTTGTCAAGAGCTACCCTGGTAGTTGTTCCAGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTGAGGCCTGGGCAATTGCGGATTTATGTTTGGACTGATCACCGGAAGCCATCTGTGCATTGTCTTGCATGGGATTATGATGTTGTCATAACCACGTTTAGCCGTCTGAGTGCAGAGTGGGGCCCTCGCAAGAGGAGTGTTTTGATGCAAGTACATTGGTTTCGGGTAATTTTAGATGAGGGGCACACTCTTGGGTCTAGCTTGAACTTAACAAACAAGTTGCAAATGGCTATTTCATTGATAGCTTCTAATCGTTGGATACTAACAGGAACTCCTACACCTAACACTCCTAACAGCCAACTTCCACATCTGCAACCATTGCTAAGGTTCCTTCATGAAGAATCTTATGGACTGAATCAAAAGTCATGGGAAGCTGGTGTGCTCAGGCCATTTGAAGCAGAAATGGAGGAGGGGAGGTCTCGTCTGTTACATCTGCTTCACAAATGCATGATTAGTGCTAGAAAGACAGACTTACAAAGCATCCCACCATGCATCAAGAAAGTTGTTTATCTGGATTTTAATGAGGAGCATGCCAGAAGTTACAATGAATTGGTAATCACTGTAAGGCGTAATATATTGATGGCTGATTGGAATGATCCCTCACATGTTGAGAGTCTGCTGAATCCAAAGCAGTGGAAGTTTCGTAGGGCAACTATAAAAAATGTCAGGCTTTCGTGCTGTGTTGCTGGACATATTAAGGTTACACATGCTGGTGAAGATATTCAAGAAACAATGGATATGTTGGTACAAAGTGGTCTGGATCCTACTTCTGGAGAGTATACCTCCATAAGATGTAATCTCTTGTATGGTGGTCACTGTGTCAGGTGCAAGGAGTGGTGCCGCCTTCCAGTCATTACACCATGTCGGCATCTGTTGTGCCTTGACTGTGTTTCTGTAGACCATACAAAGTGTACTTATCCTGGCTGCAGTAAATTGTACGAGATGCAAAGTAGACTTCCCCGACCTGAAAATCCTAATCCGAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCGTCATATAAGCAGGATAATTGGGATCCAGATTGGCAATCTACATCTAGTACTAAAGTTTCCTATCTTGTCCAGAAGTTGAAAGCCTTGCAAGGAACCAACGAAGAGACCAGCTTCTGTACAGACAATAACAATGATGAGATGCCTACTGAGAATAGTTTCTTTCTGCATAGAAGTGATGATAAATCAGCATTTCAGAAATGTTTGAAGAGCAGCACAAAGACCAATTCTAACGTCGAGAAAGTTCTTATATTTTCTCAATTTCTTGAGCATATACATGTCATTGAACAGCAGTTGGCTATTGCTGGTATCAAATATACTGGAATGTATAGCCCAATGCATTCCAGCAACAAGAAGAAGTCTTTAGCCACGTTCCAGCATGATTCAAGTTGTATGGCGCTTCTAATGGATGGAAGTGCTGCATTGGGTCTGGACTTGAGTTTTGTTACGCATGTATTTCTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCTCACCGAATGGGTGCTTCTCGCCCTATTCACGTCGAAACACTAGCAATGCGTGGTACAATTGAAGAGCAAATGCTAGGCTTTTTACAGGAAGCTGATAAATGTAGAAGATCTCCAATTAAGGATGTTGCCGCCGAATCTGAGGATGATGGCGGGGGACGAGGATATAAATCGTTGCATGATTTTGCGGAAAGCAGTTATCTATTGAAACTTAGATCTGTGTATACTAATTCAGAAAGTCCAGAAGGTGTTTTGATTGATCAACTTCAAGCAAGTTCTAACTAA 3990 0.4373 MSSDTSFADHKLCGFLCAVLTATDRDSDPAFAERCEIFSDEGEVGFHSQTGVVLSTVLNSSQCGGGGGGSKAKRTHGVGMVNGSMSVVHQLHALVTRKCTKIDARVVCVEAPRVVLLVDVYLPIQVWSGWQFPRSGAVAAAVFRHLSCDWDERCSMLSYPDYCRKTHGANESIWNLSDCHVLCCKLHPHVSSSSRKSLFELHELFKTLPGVGKQRMFNGSKIIPMDHSCRSGIWELSDDILTKILSSLDPMDLIRVSETCHHLRSLAASVMPCTKLNLFPHQQAAVEWMLQRERNAELLPHPLYAVLSTEDGFSFHVNTVSGEIVTGEAPTVRDFRGGMFCDEPGLGKTVTALSLIMKTRGTLADPPDGAQVVWCQHNGNQKCGYYEISGNNITGCSTLGKRNVSQYVSRTNDNHDYSSKRARMSNPDQQMIKLQGSCSMELSKSPVEAHFNESMHSNQYTRSLSRIKKNLCFTNEEEAMISKEKEIGEGLIKAKHASDVTPHLSLKKLPRKREGDPFEYSDTWIQCDACHKWRKLADNSMASSSAAWFCSMNPDPLYQSCSVPEQHFHTTSRITYLPGFHLKGTHGGDKQNVCFFTSVLKEHYSLINSQTKKALAWLAKISTDKLAGMETNGIRGPILNTCTASSRHFNAFHKVFQAFGLLKRVDKGVCKWFYPQHLNNLTFDVAALGMALREPLDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRIYVWTDHRKPSVHCLAWDYDVVITTFSRLSAEWGPRKRSVLMQVHWFRVILDEGHTLGSSLNLTNKLQMAISLIASNRWILTGTPTPNTPNSQLPHLQPLLRFLHEESYGLNQKSWEAGVLRPFEAEMEEGRSRLLHLLHKCMISARKTDLQSIPPCIKKVVYLDFNEEHARSYNELVITVRRNILMADWNDPSHVESLLNPKQWKFRRATIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPTSGEYTSIRCNLLYGGHCVRCKEWCRLPVITPCRHLLCLDCVSVDHTKCTYPGCSKLYEMQSRLPRPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSTKVSYLVQKLKALQGTNEETSFCTDNNNDEMPTENSFFLHRSDDKSAFQKCLKSSTKTNSNVEKVLIFSQFLEHIHVIEQQLAIAGIKYTGMYSPMHSSNKKKSLATFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLGFLQEADKCRRSPIKDVAAESEDDGGGRGYKSLHDFAESSYLLKLRSVYTNSESPEGVLIDQLQASSN 1329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00449 1329 Gene3D - 518 571 - -
Viun1g00449 1329 SMART ultradead3 274 847 IPR014001 -
Viun1g00449 1329 Pfam CW-type Zinc Finger 523 566 IPR011124 GO:0008270
Viun1g00449 1329 SMART fbox_2 236 276 IPR001810 GO:0005515
Viun1g00449 1329 CDD SF2_C_SNF 1145 1250 - -
Viun1g00449 1329 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 115 1266 - -
Viun1g00449 1329 ProSiteProfiles Zinc finger CW-type profile. 518 569 IPR011124 GO:0008270
Viun1g00449 1329 Pfam F-box domain 235 270 IPR001810 GO:0005515
Viun1g00449 1329 SUPERFAMILY F-box domain 227 269 IPR036047 GO:0005515
Viun1g00449 1329 Gene3D - 685 881 IPR038718 -
Viun1g00449 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 704 875 IPR027417 -
Viun1g00449 1329 Gene3D - 231 271 - -
Viun1g00449 1329 ProSiteProfiles F-box domain profile. 230 282 IPR001810 GO:0005515
Viun1g00449 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 360 IPR027417 -
Viun1g00449 1329 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1136 1286 IPR001650 -
Viun1g00449 1329 Pfam Helicase conserved C-terminal domain 1134 1240 IPR001650 -
Viun1g00449 1329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 778 1272 IPR027417 -
Viun1g00449 1329 Pfam SNF2-related domain 281 922 IPR000330 GO:0005524|GO:0140658
Viun1g00449 1329 ProSitePatterns Zinc finger RING-type signature. 1014 1023 IPR017907 -
Viun1g00449 1329 SMART helicmild6 1158 1240 IPR001650 -
Viun1g00449 1329 CDD DEXDc_SHPRH-like 700 877 - -
Viun1g00449 1329 CDD F-box_SF 235 267 - -
Viun1g00449 1329 Gene3D - 1066 1302 IPR027417 -
Viun1g00449 1329 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 681 836 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00449 Viun-Chr1 3526320 3539261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00449 706 1260 RAD5 or RAD16-like Gene Family AT5G22750 25.546 1.70e-43 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun1g00449 SNF2_N 8.7e-100 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00449 - - gmx:100803102 2324.28