Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00443 ATGCCACCTTCTTTCATCACTCTTTTCATCTTTTTCTCTCTTCTTCTTCTTCTTCTTCTCCTGTTTTGGCCTGCAACTTCCCACATCATTATCATAATCATGGGTTTGGCTGCAGAGGCACAGTTTCATGTTCTGGCTGTTGATGATAGCCTTATTGACAGAATGTTGATTGAGAGACTCCTCAAAACCTCTTCTTTTCATGTTACTGCTGTGGATTCTGGTAGTAAGGCTTTGAGGTTTCTTGGTTTGGTTGAAGATGAGAAGAGAAATGAAGAGCCTCCCACCATTGCTTTAGAAGCCAATCAGGATGTAGATGTAAACCTGATCATAACTGATTACTGTATGCCAGAAATGACAGGGTATGATCTGCTCAGAAAAATCAAGGAATCTAAATCTCTTAAAGATATACCAGTGGTGATTATGTCCTCAGAGAATGTTCCATCAAGAATCAACAGATGCCTAGAAGATGGAGCTGATGAATTCTTTTTGAAACCAGTTCAACAGTCAGATGTAAACAGGCTGAGACCACATTTGTTGAAATCAAAAGTTAAGGATGAAGAAGAGCAACAGATGAATAACAAAAGGAAGGAAACAGAAGAAGAAGAAGAAAGTGATTCCCCAGATAAAAGCAGGACAAAAATGGAGCCTCAAAAAGTGGTTAATTCAAGTTAA 672 0.3869 MPPSFITLFIFFSLLLLLLLLFWPATSHIIIIIMGLAAEAQFHVLAVDDSLIDRMLIERLLKTSSFHVTAVDSGSKALRFLGLVEDEKRNEEPPTIALEANQDVDVNLIITDYCMPEMTGYDLLRKIKESKSLKDIPVVIMSSENVPSRINRCLEDGADEFFLKPVQQSDVNRLRPHLLKSKVKDEEEQQMNNKRKETEEEEESDSPDKSRTKMEPQKVVNSS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00443 223 Pfam Response regulator receiver domain 44 171 IPR001789 GO:0000160
Viun1g00443 223 Coils Coil 181 204 - -
Viun1g00443 223 Gene3D - 43 220 - -
Viun1g00443 223 MobiDBLite consensus disorder prediction 175 215 - -
Viun1g00443 223 MobiDBLite consensus disorder prediction 173 223 - -
Viun1g00443 223 CDD REC_typeA_ARR 44 174 - -
Viun1g00443 223 PANTHER TWO-COMPONENT RESPONSE REGULATOR 42 211 IPR045279 GO:0009736
Viun1g00443 223 ProSiteProfiles Response regulatory domain profile. 43 179 IPR001789 GO:0000160
Viun1g00443 223 SUPERFAMILY CheY-like 42 182 IPR011006 -
Viun1g00443 223 SMART REC_2 42 178 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00443 Viun-Chr1 3464395 3465946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00443 34 196 Response Regulator Gene Family AT3G57040 62.651 2.80e-70 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun1g00443 Response_reg 7.2e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00443 K14492 - gmx:100818762 295.434