Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g00437 ATGAGCATGTTAGGCCTGAGAGACCTAGTTCTCATAGCTCAAACACCTTCCCTGCACCAACCCCAACCCATCTCAGAAAACCAAACTCCCAACCTTCCTCTTCCTTCTTCCGCCGCTCTCAGTGTTGGCTTTGGCATTTTCCCTCTCCTCACTGCCACACCCTGTGTTCCACACCCTCACCAAACCAATGAGATTCAAGACTGCGCTGGTGGTGCTGCTGGCAACACCACCACCACCACCACCACCAACTATTGGAACCTCAAGATGTGCCCAGAAGTGAATCCTCCGAAGAAGGGTGTGATCAACATGGTTGATGACGATGAGGAGGATGATGAGGATGATGAGAGACATCATCATCATCATAATCATCATAATCACCATAAGGGTGTGATGGAGAGCGAAGAAAACGGGATTTATGGACCTGACTTTAGGGTGTGTCAAGATTGTGGCAACAGGGCCAAAAAAGATTGCATCTTTAGAAGATGCAGGACCTGTTGCAAGGGACGTGGATACGATTGCAGCACTCACGTGAAGAGCACGTGGGTCCCTTCAATTCGCCGCCGGGAGCGGGACACGGTGCTTCCTTCCGCCGGTGGCAGTAAGAGGCCAAGAGCTATAGTGGGGTCCTCACAGAACGCCACTGCCACTTCTCACAGCTCCAACTCCAATAACGCTACAACACCTAAAAGCTTAGCCACAATCTCTTCTCACCAAGATGCGAGCTTCAAACAGTCTTTACCCGGTCATGTTCGTGCACCTGCAGTGTTCAAGTGTCACAGAGTCTCTGCCATTGGGAATGGTGAAGATGAGTTTGCATACTTGGCAACGGTGCATATCAGTGGCCATGTCTTCAAAGGGTTTCTCTATGACCATGGAGTTGAAGGGAAAATTGCAAATGCAGTGCCTTGTGTTTCGGAACTGCAACTGGGAAACAATTGCAGTGCCAAGAACAGAGAATGTTCTTCTGCAATTGGACTTCACAATAACAACAATGCATACCCTGCTTCTGCCACCTGA 1017 0.4956 MSMLGLRDLVLIAQTPSLHQPQPISENQTPNLPLPSSAALSVGFGIFPLLTATPCVPHPHQTNEIQDCAGGAAGNTTTTTTTNYWNLKMCPEVNPPKKGVINMVDDDEEDDEDDERHHHHHNHHNHHKGVMESEENGIYGPDFRVCQDCGNRAKKDCIFRRCRTCCKGRGYDCSTHVKSTWVPSIRRRERDTVLPSAGGSKRPRAIVGSSQNATATSHSSNSNNATTPKSLATISSHQDASFKQSLPGHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDHGVEGKIANAVPCVSELQLGNNCSAKNRECSSAIGLHNNNNAYPASAT 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g00437 338 MobiDBLite consensus disorder prediction 188 229 - -
Viun1g00437 338 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 77 329 IPR007818 GO:0003700|GO:0006355
Viun1g00437 338 MobiDBLite consensus disorder prediction 205 229 - -
Viun1g00437 338 MobiDBLite consensus disorder prediction 107 131 - -
Viun1g00437 338 Pfam Domain of unknown function (DUF702) 145 294 - -
Viun1g00437 338 NCBIfam LRP1 C-terminal domain 246 293 IPR006511 -
Viun1g00437 338 NCBIfam putative zinc finger domain, LRP1 type 145 187 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g00437 Viun-Chr1 3354036 3356294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g00437 146 333 C2H2 Transcription Factor Family AT5G12330 52.217 3.29e-54 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Viun1g00437 DUF702 4.7e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g00437 - - vun:114175485 638.647